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Record W4404489761 · doi:10.1002/ndr2.70005

First report of <i>Phytophthora ilicis</i> causing leaf spot, shoot blight and bleeding canker on <i>Ilex aquifolium</i> in Slovenia

2024· article· en· W4404489761 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

aboutThe title or abstract carries a Canadian signal from the geographic lexicon.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueNew Disease Reports · 2024
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Pathogens and Resistance
Canadian institutionsnot available
FundersU.S. Forest Service
KeywordsCankerBiologyBlightLeaf spotBotanyShootPathogenicityPhytophthoraMicrobiology

Abstract

fetched live from OpenAlex

English holly (Ilex aquifolium) is a small, evergreen tree that grows naturally in temperate and mediterranean mountain forests in Europe, and is grown throughout the world for its ornamental characteristics. Ecologically, holly is a shade-tolerant and very slow-growing plant that populates the undergrowth in temperate deciduous forests and woodlands dominated by oak or beech (Guerrero Hue et al., 2016). In Slovenia I. aquifolium shows an irregular distribution in wet and shady places with quite mild climates such as the Vipava and Osilniška valleys. Due to illegal removal from the wild, holly has been protected by national legislation in Slovenia. In October 2023, moderate defoliation was found on several young English holly trees located in a mixed forest near Nova Gorica in western Slovenia (Gozd Panovec, 45°56'47.7“N 13°40'06.0”E). Diseased plants exhibited leaf necrosis, shoot blight, defoliation and occasionally stem bleeding cankers and inner bark discolouration (Fig. 1). Field surveys conducted in spring 2024 revealed a disease incidence of 60% along two linear transects of 25 m. Fifteen necrotic leaves and three inner bark (stem) samples were collected from six diseased plants chosen at random in the study area. Samples were processed as described by Bregant et al. (2023) and cultured on carrot agar at 18°C in the dark. A typical slow-growing homothallic Phytophthora species was isolated consistently from the diseased samples (Fig. 2). Isolates produced semi-papillate mostly caducous sporangia (mean size 41.8 ± 6.6 × 26.4 ± 3.6 µm, n = 25) with long pedicels (mean length 17.3 ± 5.4 µm, n = 25) after 36–48 hours on carrot agar flooded in non-sterile pond water (Fig. 2). Based on these morphological data, 14 isolates appeared compatible with the species Phytophthora ilicis Buddenh. & Roy A. Young. The morphological identification was confirmed by molecular analysis based on the sequence of the ITS and cox1 regions obtained following the methodology reported in Bregant et al. (2023). Phylogenetic reconstructions for cox1 sequences of two Slovenian isolates of P. ilicis and nine other isolates together with the other species belonging to ITS clade 3 were performed with MEGA-X 10.1.8, including all gaps in the analyses and choosing the best model determined automatically by the software (Kumar et al., 2018). Maximum likelihood analysis was performed with a neighbour-joining starting tree generated by the software (Fig. 3). Two additional P. ilicis strains isolated in the Marche region (Castelfidardo, Italy) were included in the phylogenetic analysis and a sequence of P. alpina (CBS 146801) was used as an outgroup. The sequences of P. ilicis generated in this study were deposited in GenBank (isolate SLO35 (Slovenia): GenBank Accession Nos.: PQ452714 & PQ472567; isolate SLO43 (Slovenia): PQ452715 & PQ472568; isolate CB1100 (Italy): PQ452716 & PQ472569; isolate CB1101 (Italy): PQ452717 & PQ472570). Mitochondrial cox1 phylogeny shows that the Slovenian population of P. ilicis is identical to those in other parts of the Mediterranean and in North America (Fig. 3). The pathogenicity of Phytophthora ilicis was verified by inoculating asymptomatic young leaves of Ilex aquifolium with a representative isolate (SLO35). The upper surface of the leaf was disinfected with 70% ethanol and inoculated (without wounding) by an agar-mycelium plug (3 mm Ø) cut from the margin of a four-day-old colony on potato dextrose agar (PDA). Eight leaves were inoculated with the pathogen in the trial and another five were inoculated with a sterile PDA plug as a control. Inoculated leaves were maintained in humid chamber at 18 ± 1°C for 72 hours. Phytophthora ilicis proved to be pathogenic on holly leaves, causing extensive necrosis (mean lesion length 710 ±313 mm2) (Fig. 4). Control leaves remained asymptomatic. Phytophthora ilicis was successfully re-isolated from all inoculated leaves, thus fulfilling Koch's postulates. Phytophthora. ilicis is one of the few known host-specific Phytophthora species. It was initially described in the western United States and is also recorded on ornamental holly trees in Canada, UK, the Netherlands, and Spain (Buddenhagen & Young, 1957, Pintos et al., 2012). In 2014 P. ilicis was reported for the first time in natural holly stands in Sardinia and Corsica, where it probably represents an endemic species (Scanu et al., 2014). To our knowledge, this is the first report of P. ilicis on I. aquifolium in Slovenia. A study is currently underway to study the distribution and populations of this species in the rare and fragmented formations of I. aquifolium in continental Italy and Slovenia. This research was funded by the project TESAF1DOR-00414, Public Forest Service funded by Ministry of Agriculture, Forestry and Food (Slovenia), and co-funded by Slovenian Research and Innovation Agency (Research Program P4-0107 Forest Biology, Ecology and Technology).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.824
Threshold uncertainty score0.343

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.223
Teacher spread0.210 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it