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Record W4409786049 · doi:10.70962/cis2025abstract.63

Never Say Never—Delayed and Unusual Presentations of XLA in Two Patients with a Kinase-Domain Variant

2025· article· en· W4409786049 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueJournal of Human Immunity · 2025
Typearticle
Languageen
FieldMedicine
TopicChronic Lymphocytic Leukemia Research
Canadian institutionsHospital for Sick ChildrenMcMaster University
Fundersnot available
KeywordsDomain (mathematical analysis)MedicineProtein kinase domainVirologyGeneticsBiologyMathematics

Abstract

fetched live from OpenAlex

Background X-linked agammaglobulinemia (XLA) is caused by pathogenic variants in Bruton tyrosine kinase (BTK), causing arrest of B cell development and immunoglobulin production. Patients typically present in infancy or early childhood with recurrent infections, notably bacterial sinopulmonary and gastrointestinal infections. Older presentations are infrequently described, and their cause remains unclear. Objective We describe two unrelated patients who presented with late-onset XLA and unusual manifestations, both harboring the same variant in the kinase domain. Clinical Case Descriptions Patient 1 was diagnosed at age 17 after experiencing multiple sinopulmonary infections. He subsequently developed several difficult-to-treat autoimmune/inflammatory complications, including recurrent fevers with adenopathy, seronegative tenosynovitis, immune thrombocytopenic purpura, liver nodular regenerative hyperplasia (NRH), portal hypertension, and widespread granuloma annular-like lesions. After failing multiple immunosuppressive medications, he experienced some improvement on tofacitinib. Patient 2 was diagnosed at age 54, following a less extensive infectious history, including a pneumonia (age 8) requiring intravenous antibiotics and bacteremia secondary to trauma (age 38). He also has a likely NRH, pending biopsy. Laboratory Investigations Patient 1 had absent B cells and complete agammaglobulinemia with residual IgM. Patient 2 had near-absent B cells, with surprisingly normal total IgG and IgA and low IgM. He mounted an abnormally low pneumococcal titer despite boosting. Both patients underwent extensive genetic testing, revealing only the pathogenic BTK variant: c.1574G>A (p.Arg525Gln). Discussion Adult-onset XLA is rare and can present clinically as “CVID.” Interestingly, most late cases described to date had absent B cells, suggesting a likely decline in B cells over time. Our patients both harbored a known variant affecting Arg525 of the kinase domain. This variant has been previously reported in classical, early onset XLA. However, it has also been described in patients presenting later with CVID. This variant is expected to abrogate the catalytic kinase activity due to loss of substrate recognition. It is unclear if phenotypic variability relates to the variant itself or to a polygenic effect. We suggest clinicians maintain suspicion for XLA in patients presenting with absent B cells at any age, while the best management strategies for autoimmune/inflammatory manifestations remain to be determined.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.088
Threshold uncertainty score0.426

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.338
Teacher spread0.325 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it