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Record W4411474706 · doi:10.1016/j.trac.2025.118349

Aptamer-based biosensors: from SELEX to biomedical diagnostics

2025· article· en· W4411474706 on OpenAlexafffund
Stefen Stangherlin, Jung Heon Lee, Juewen Liu

Bibliographic record

VenueTrAC Trends in Analytical Chemistry · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAdvanced biosensing and bioanalysis techniques
Canadian institutionsUniversity of Waterloo
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsAptamerSystematic evolution of ligands by exponential enrichmentBiosensorNanotechnologyComputational biologyComputer scienceBiologyMaterials scienceMolecular biologyGeneticsRNA

Abstract

fetched live from OpenAlex

With excellent binding properties, stability, programmable structures, and ease of modification, DNA aptamers are promising for developing biosensors for both point-of-care and continuous monitoring applications. Over the last few years, significant progress has been made in the selection of high-quality aptamers for important target molecules, fundamental understanding of aptamer binding, and biosensor development, especially in the form of portable sensors, continuous in vivo monitoring and wearable devices. For small molecule targets, library-immobilization-based selection has yielded over 100 high-quality short aptamers with well-defined secondary structures. For protein targets, engineering polyvalent aptamers and slow off-rate aptamers can better mimic the binding properties of antibodies allowing extensive washing and binding in complex sample matrices. New methods in cell-SELEX have also provided insights into the isolation of aptamers against rare surface biomarkers. This review aims to capture these developments, which will build a solid foundation for future research and development in aptamer-based biosensors. • New aptamer selection methods reviewed for small molecules, proteins and cells. • Wearable biosensors, in vivo continuous monitoring devices and lateral flow devices based on aptamers described. • Critical comparison of different aptamer selection and sensing strategies.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: none
Teacher disagreement score0.004
Threshold uncertainty score0.022

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.003
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0010.001
Science and technology studies0.0000.001
Scholarly communication0.0030.003
Open science0.0010.002
Research integrity0.0010.003
Insufficient payload (model declined to judge)0.0020.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.317
Teacher spread0.307 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations118
Published2025
Admission routes2
Has abstractyes

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