Data from: Estimating a physiologically-based threshold to oxygen and temperature from marine monitoring data reveals challenges and opportunities for forecasting distribution shifts
Bibliographic record
Abstract
Species distribution modeling is increasingly used to describe and anticipate consequences of a warming ocean. These models often identify statistical associations between distribution and environmental conditions such as temperature and oxygen, but rarely consider the mechanisms by which these environmental variables affect metabolism. Oxygen and temperature jointly govern the balance of oxygen supply to oxygen demand, and theory predicts thresholds below which population densities are diminished. However, parameterizing models with this joint dependence is challenging because of the paucity of experimental work for most species, and the limited applicability of experimental findings in situ. Here we ask whether the joint effects of temperature and oxygen can be reliably inferred from species distribution observations in the field, using the U.S. Pacific Coast as a model system. We developed a statistical model that adapted the metabolic index—a compound metric that incorporates these joint effects on the ratio of oxygen supply and oxygen demand by applying an Arrhenius equation—and used a non-linear threshold function to link the index to fish distribution. Through simulation testing, we found that our statistical model could not precisely estimate the parameters due to inherent features of the distribution data. However, the model reliably estimated an overall metabolic index threshold effect. When applied to case studies of real data, it provided a better fit to sablefish (Anoplopoma fimbria) spatial distribution than previously used models. This physiological framework may improve predictions of species distribution, even in novel environmental conditions. Further efforts to combine insights from physiology and realized species distributions will improve forecasts of species’ responses to future environmental changes.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.002 | 0.008 |
| Meta-epidemiology (narrow) | 0.001 | 0.000 |
| Meta-epidemiology (broad) | 0.001 | 0.001 |
| Bibliometrics | 0.001 | 0.001 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.001 | 0.003 |
| Open science | 0.001 | 0.001 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".