Data from: Estimating a physiologically-based threshold to oxygen and temperature from marine monitoring data reveals challenges and opportunities for forecasting distribution shifts
Why this work is in the frame
A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.
Bibliographic record
Abstract
Species distribution modeling is increasingly used to describe and anticipate consequences of a warming ocean. These models often identify statistical associations between distribution and environmental conditions such as temperature and oxygen, but rarely consider the mechanisms by which these environmental variables affect metabolism. Oxygen and temperature jointly govern the balance of oxygen supply to oxygen demand, and theory predicts thresholds below which population densities are diminished. However, parameterizing models with this joint dependence is challenging because of the paucity of experimental work for most species, and the limited applicability of experimental findings in situ. Here we ask whether the joint effects of temperature and oxygen can be reliably inferred from species distribution observations in the field, using the U.S. Pacific Coast as a model system. We developed a statistical model that adapted the metabolic index—a compound metric that incorporates these joint effects on the ratio of oxygen supply and oxygen demand by applying an Arrhenius equation—and used a non-linear threshold function to link the index to fish distribution. Through simulation testing, we found that our statistical model could not precisely estimate the parameters due to inherent features of the distribution data. However, the model reliably estimated an overall metabolic index threshold effect. When applied to case studies of real data, it provided a better fit to sablefish (Anoplopoma fimbria) spatial distribution than previously used models. This physiological framework may improve predictions of species distribution, even in novel environmental conditions. Further efforts to combine insights from physiology and realized species distributions will improve forecasts of species’ responses to future environmental changes.
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.002 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.001 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.001 | 0.001 |
| Open science | 0.002 | 0.008 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it