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Record W7011348621

Mechanism of action of Type I and Type II combi-molecules designed to target DNA and epidermal growth factor receptor in solid tomours

2011· dissertation· en· W7011348621 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueeScholarship@McGill (McGill) · 2011
Typedissertation
Languageen
FieldSocial Sciences
TopicLaw and Political Science
Canadian institutionsnot available
FundersNational Cancer InstituteCanadian Institutes of Health ResearchMcGill University Health CentreMcGill University
KeywordsEpidermal growth factor receptorSignal transductionMAPK/ERK pathwayEGFR inhibitorsMechanism of actionReceptorGrowth factor receptorEpidermal growth factor
DOInot available

Abstract

fetched live from OpenAlex

The overexpression of several receptors and dysfunction of signal transduction pathways characterize the heterogeneity of many solid tumours. Targeted therapies against epidermal growth factor receptor (EGFR)-overexpressing tumours involve well tolerated EGFR inhibitors. However, the potency of these inhibitors is mitigated by several factors including mutations in signaling pathways and receptor heterogeneity. To circumvent this problem, we recently designed a novel strategy that seeks to synthesize molecules "programmed" to release an EGFR inhibitor and a cytotoxic DNA-damaging agent. This led to mixed EGFR-DNA targeting agents, termed "type I combi-molecules". Previous work demonstrated that these compounds: (1) inhibited EGFR and (2) damaged DNA. However, the correlation of their degradation, localization and distribution in the cell with their mechanism of action remained elusive. In this thesis, we designed a fluorescence-labeled combi-molecule AL237 "programmed" to release a blue fluorescent EGFR inhibitor and a green DNA targeting species. The results showed that AL237 blocked EGFR phosphorylation and downstream MAPK pathway, subsequently leading to downregulation of XRCC1 and ERCC1, two DNA repair enzymes. Following demonstration of the ability of AL237 to fully block the MAPK pathway, we studied its localization in the tumour cells by fluorescence microscopy. The results showed that the released quinazoline colocalized with EGFR in the perinuclear region and the green fluorescence was detected in isolated nuclei. This led to a model whereby combi-molecule entered the cell, bind to the EGFR at the plasma membrane to prevent signal transduction and abundantly localized in the perinuclear region from where the released alkylating species could diffuse to the nucleus. This mechanism explained the significantly high levels of DNA damaging species in the nuclei of cells expressing EGFR. Further studies exploiting AL237 fluorescence properties demonstrated that its potency did not depend on the P-gp status of the cells. The P-gp independence of AL237 effect was explained by its intracellular degradation that prevented the efflux of the intact structure. Further studies on combi-molecules that do not require hydrolysis to generate the two targeting species (type II combi-molecules) showed that they exhibited potency in the submicromolar range. Studies designed to elucidate the mechanism underlying the exquisite potency of ZR2008 showed that it induced significant levels of apoptosis, independently of the AKT status of the cells. A constant in its potency was its ability to block cells in G1/S and to downregulate the antiapoptotic protein survivin. Our findings suggest that pathways leading to the inhibition of survivin could be a major molecular determinant for the cytotoxicity of ZR2008. The results from this work in toto contributed to the elucidation of the mechanism of action of two classes of combi-molecules: type I and type II.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.634
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.033
GPT teacher head0.298
Teacher spread0.265 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it