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Record W7083836982 · doi:10.5705/ss.202024.0346

Gaussian Variational Approximation with Composite Likelihood for Crossed Random Effect Models

2025· article· en· W7083836982 on OpenAlexafffund

Bibliographic record

VenueStatistica Sinica · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Mapping and Diversity in Plants and Animals
Canadian institutionsUniversity of Toronto
FundersNatural Sciences and Engineering Research Council of CanadaGovernment of Jiangsu Province
KeywordsGaussianComposite numberGaussian random fieldMaximum likelihoodGaussian processQuasi-maximum likelihood

Abstract

fetched live from OpenAlex

Composite likelihood usually ignores dependencies among response components, while variational approximation to likelihood ignores dependencies among parameter components.What both methods have in common is that they essentially break the dependence of random effects.In this paper, we derive a Gaussian variational approximation to the composite log-likelihood function for Poisson and Gamma models with crossed random effects.We present theoretical aspects of the estimates derived from this approximation and support these theories with simulation studies.Specifically, we show the estimates are consistent with a convergence rate m -1/2 +n -1/2 , where m and n denote the number of rows and columns, respectively.We further provide detailed asymptotic normality results under a new regime where log m/ log n → δ for δ ∈ (1/2, 2).Additional simulation studies show that our method yields comparable estimation performance and is slightly faster than the Laplace approximation in the package glmmTMB and a Gaussian variational approximation to the full log-likelihood function.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.014
metaresearch head score (Gemma)0.036
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.014
Threshold uncertainty score0.072

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0140.036
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.003
Bibliometrics0.0020.002
Science and technology studies0.0010.003
Scholarly communication0.0020.003
Open science0.0050.003
Research integrity0.0020.004
Insufficient payload (model declined to judge)0.0050.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.254
Teacher spread0.246 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes2
Has abstractyes

Explore more

Same venueStatistica SinicaSame topicGenetic Mapping and Diversity in Plants and AnimalsFrench-language works237,207