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An Integrated Framework for Fuzzy Classification and Analysis of Gene Expression Data

2010· book-chapter· en· W72577311 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueIGI Global eBooks · 2010
Typebook-chapter
Languageen
FieldComputer Science
TopicEvolutionary Algorithms and Applications
Canadian institutionsUniversity of Calgary
Fundersnot available
KeywordsClassifier (UML)Gene selectionFuzzy logicCorrelationArtificial intelligenceComputer scienceFuzzy ruleGeneFeature selectionMachine learningData miningPattern recognition (psychology)MathematicsFuzzy setBiologyGene expressionGenetics

Abstract

fetched live from OpenAlex

This chapter takes advantage of using fuzzy classifier rules to capture the correlations between genes. The main motivation to conduct this study is that a fuzzy classifier rule is essentially an “if-then” rule that contains linguistic terms to represent the feature values. This representation of a rule that demonstrates the correlations among the genes is very simple to understand and interpret for domain experts. In this proposed gene selection procedure, instead of measuring the effectiveness of every single gene for building the classifier model, the authors incorporate the impotence of a gene correlation with other existing genes in the process of gene selection. That is, a gene is rejected if it is not in a significant correlation with other genes in the dataset. Furthermore, in order to improve the reliability of this approach, the process is repeated several times in these experiments, and the genes reported as the result are the genes selected in most experiments. This chapter reports test results on ?ve datasets and analyzes the achieved results from biological perspective.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.082
Threshold uncertainty score0.783

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.044
GPT teacher head0.307
Teacher spread0.262 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it