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4,299,418 works, Canadian by any of four routes.

Every filter state is a URL; the URL is the query; the query is citable via /q/⟨hash⟩. The page, the API and the export parse the same parameters.

The current cohort, streamed from the database: every work column, the machine labels, the provisional scores, and the per-row validation status. Exports are capped at 100,000 rows. Mints a permanent /q/ link for this exact query. The same filters always produce the same link, whoever asks.

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Bioinformatics and Genomic Networks
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Direct Codex and Gemma labels are unvalidated and sparse. Distilled predictions cover the full frame and are also unvalidated. Choose the evidence source explicitly; absence of a direct label is never a negative label.

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The four routes compose: require the funder route and exclude affiliation to get the funder-only stratum no affiliation-based frame ever sees.

1,922 results · 1 filter active ·
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20002025
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Machine labels · sparse coverage
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An unlabeled work is unknown, not a negative. Label coverage is reported on every query.
1,922 works in the cohort · of 4,299,418page 17 of 39

Labels cover 6 of 1,922 works in this cohort. The rest are unlabeled, which is not a negative label: the label table is sparse today and grows as labeling rounds land.

Distilled predictions cover 1,922 of 1,922 works in this cohort. Predictions are machine_predicted_unvalidated. The Gemma side is a direct model label for every work (title-only); the Codex side is a distilled, calibrated classifier. Candidate is the union; consensus is the intersection.

afffundunlabeled
Cytoscape ESP: simple search of complex biological networks
Maital Ashkenazi, Gary D. Bader, Allan Kuchinsky, Menachem Moshelion, David J. States
2008· article· en· Bioinformatics· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
13
citations
affunlabeled
MP-PIPE
Andrew Schoenrock, Frank Dehne, James R. Green, Ashkan Golshani, Sylvain Pitre
2011· article· en· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
13
citations
affunlabeled
An omics perspective of protein disorder
Jeremy Bellay, Magali Michaut, Tae‐Hyung Kim, Sangjo Han, Recep Çolak, Chad L. Myers +1 more
2011· review· en· Molecular BioSystems· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
13
citations
fundno affunlabeled
PerPAS: Topology-Based Single Sample Pathway Analysis Method
Chengyu Liu, Rainer Lehtonen, Sampsa Hautaniemi
2017· article· en· IEEE/ACM Transactions on Computational Biology and Bioinformatics· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
13
citations
affno abstractunlabeled
Extracting and Explaining Biological Knowledge in Microarray Data
Paul Kennedy, Simeon Simoff, David B. Skillicorn, Daniel Catchpoole
2004· book-chapter· en· Lecture notes in computer science· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
13
citations
affunlabeled
The Cytoscape app article collection
Alexander R. Pico, Gary D. Bader, Barry Demchak, Oriol Guitart, Timothy Hull, William J.R. Longabaugh +9 more
2014· preprint· en· F1000Research· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
12
citations
affunlabeled
Dynamic visualization of expressed gene networks
Ingrid Remy, Stephen W. Michnick
2003· review· en· Journal of Cellular Physiology· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
12
citations
affunlabeled
RCy3: Network Biology using Cytoscape from within R
Julia Gustavsen, Shraddha Pai, Ruth Isserlin, Barry Demchak, Alexander R. Pico
2019· preprint· en· bioRxiv (Cold Spring Harbor Laboratory)· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
12
citations
affunlabeled
EGAD: Ultra-fast functional analysis of gene networks
Sara Ballouz, Melanie Weber, Paul Pavlidis, Jesse Gillis
2016· preprint· en· bioRxiv (Cold Spring Harbor Laboratory)· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
12
citations
afffundunlabeled
A GO catalogue of human DNA-binding transcription factors
Ruth C. Lovering, Pascale Gaudet, Márcio Luís Acencio, Alexandr Ignatchenko, Arttu Jolma, Oriol Fornés +5 more
2020· preprint· en· bioRxiv (Cold Spring Harbor Laboratory)· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
12
citations
venueno affunlabeled
The study of protein–protein interactions in bacteria
Roberto Velasco-García, Rocío Vargas-Martínez
2012· review· en· Canadian Journal of Microbiology· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
12
citations
affaboutunlabeled
BIAS: Bioinformatics Integrated Application Software
Greg Finak, Noa Godin, Michael Hallett, François Pépin, Z. Rajabi, Varun Srivastava +1 more
2004· article· en· Computer applications in the biosciences· Biochemistry, Genetics and Molecular Biology
machine prediction:candidate · noneconsensus · none
12
citations

How this was built: Screen · Findings · About