Age determination of Atlantic cod (Gadus morhua): 2012 Workshop between Canada and France on cod otoliths. Final report of the project SALMOCODAGE
Notice bibliographique
Résumé
France and Canada have been working closely together for numerous years under the governance of The Northwest Atlantic Fisheries Organisation (NAFO) that regulates fisheries in the Northwest Atlantic. This workshop was the first step to achieve greater agreement in the estimation of age from calcified pieces between the scientific experts from those 2 countries. The goal of this project is to realize a calibration of the estimation of ages from cod (Gadus morhua) between France and Canada in order to optimize the precision of the data supplied by those countries for stock assessment purposes. There has been in the past an internal workshop for Atlantic Canada in 1997 on ageing fish and numerous workshops for Northeast Atlantic, more precisely for the Baltic and North sea under the governance of the International Council for the Exploration of the Sea (ICES). This workshop has been organized in St-Pierre et Miquelon from 10 to 14 September 2012 and regrouped 6 scientists from IFREMER (France) and the Department of Fisheries and Oceans (DFO). This meeting was subsidized by the Ministry of Overseas (France) and the Territorial Council of St-Pierre et Miquelon. Prior to this workshop a sample of 451 otoliths and otolith images has been interpreted independently by 3 French and 3 Canadian readers. The sample consisted of 2 samples from the 3Ps NAFO area (Research survey and commercial) and 1 sample from the 3Pn, 4RS NAFO area (from various sources). Two different methods were used to age the otoliths, one using images from sliced otoliths (France) and one using broken (or cut) otoliths (Canada). Both methods used transmitted light. Results from the different sets of calcified pieces showed some differences. The set of cod otoliths from research vessel in 3Ps presented the higher percentage agreement (83%). Of the 236 otoliths, 112 were read with 100% agreement (47.5%). Modal age ot hese fish was comprised between 1 and 13 years with the mean at 4 years. The second set with high percent agreement was composed by cod otoliths from commercial vessels of the same area (3Ps) (71.7%). Of the 115 otoliths, 24 were read with 100% percentage agreement (21%). These fish were older than those from the research vessel. The mean modal age was 6 years (range from 4 to 11). The other set of cod otoliths showed a percentage agreement of 69%. This set was composed of fish both commercial and research vessels from the 3Pn, 4RS area. Of the 100 otoliths, only 7 were read with 100% percentage agreement (7%). Difference in precision could be due to the number of readers (8 for set 3 and only 4 for set 1), the composition of the samples (set 1 was composed of fish younger than other sets) and also of the sampling area. During this workshop it has been be noted that there was certainty of bias among readings from the 3 sets of cod otoliths. Moreover, there is certainty of bias between 2 readings from different methods from the same reader (example: readers 1 and 2 of the set from commercial and research vessels coming from the 3Pn, 4RS areas). The position of the first ring was identified as an important source of bias. Some measurements were taken on otolith images with 100% agreement from TNPC software\nin order to determine distances between nucleus and the settling check, and also from the nucleus to the two first growth rings. Distance analysis will provide tools to identify mismatches between readings and/or readers. The second important source of bias was the difference in the edge interpretation during July and August. When Canadian readers identify the edge with small opaque zone (which is not continuous around the edge), then the last translucent ring is considered as growth ring. In contrary, for the French readers, it is not a growth ring. Ages assigned by the Canadian personnel are generally one year greater than those of participants from France for those months. Therefore, in order to reduce those biases, a guideline on reading methods was presented and a database of reference otolith images was started (where 100% agreement was reached).\nThis first Franco-Canadian meeting on age estimation has identified sources of biases and helped to reduce them. It also produced reference documents common to France and Canada for cod in the Northwest Atlantic. However some differences persist, mainly on the otoliths sampled in July and August and this could be part of future studies.
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Comment cette classification a été obtenuedéplier
Prédiction machine sur la base complète
Imitation des enseignantsNi prévalence calibrée, ni vérité terrain. Validation humaine à venir. Le volet Gemma est une étiquette directe du modèle pour chaque travail de la base, lue sur la notice réduite au titre. Le volet Codex est un classifieur appris des 10 348 étiquettes directes de Codex et calibré sur les taux pondérés de l'échantillon; les champs sans appui suffisant ne portent aucun appel Codex. Le mode candidate est l'union des deux volets; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont pas des étiquettes humaines.
Scores du classifieur distillé par catégorie (deux têtes)
| Catégorie | Codex | Gemma |
|---|---|---|
| Métarecherche | 0,015 | 0,006 |
| Méta-épidémiologie (sens strict) | 0,001 | 0,001 |
| Méta-épidémiologie (sens large) | 0,001 | 0,001 |
| Bibliométrie | 0,004 | 0,002 |
| Études des sciences et des technologies | 0,004 | 0,002 |
| Communication savante | 0,002 | 0,001 |
| Science ouverte | 0,002 | 0,004 |
| Intégrité de la recherche | 0,002 | 0,002 |
| Charge utile insuffisante (le modèle a refusé de juger) | 0,003 | 0,001 |
Scores machine (provisoires)
Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.
Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.
score_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découleClassification
machine, non validéePrédiction automatique; un appel candidat d’une seule source (Gemma direct ou Codex distillé), pas un consensus.
Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».