Abstract 5610: Circulating tumor DNA: FOXL2 402C-G mutation can be identified in plasma from adult granulosa cell tumor patients with recurrent disease
Notice bibliographique
Résumé
Abstract Adult granulosa cell tumors (aGCT) represent 2-5% of all ovarian cancers. Most patients present with stage 1 disease and have a good prognosis, however up to 30% of aGCTs will recur (median=7 years), and 50% of these patients die of aGCT. These women require prolonged surveillance for serum tumor markers. In recent years, the detection of somatic mutations in free circulating tumor DNA (ctDNA) in plasma has been investigated as a non-invasive method to diagnose and monitor different cancers. The analysis of plasma DNA, which is a mixture of ctDNA and normal DNA, can be extended to aGCT patients that are at risk to recur, which would involve testing for the presence of the FOXL2 402C->G mutation. This mutation is known to be present in 95% of aGCTs; FOXL2 mutation testing is currently being used to aid in tumor differential diagnosis. FOXL2 mutations in free ctDNA can be detected in the plasma of aGCT patients and may aid in diagnosis and monitoring of patients. Plasma samples (1-2mL) were extracted for ctDNA using the Qiagen circulating nucleic acid kit. The ctDNA was preamplified for 10 cycles using the C134W FOXL2 Taqman primer/probe, ABI genotyping mix, followed by a 1:5 dilution. Preamplified ctDNA products were subjected to droplet formation and counted on the Raindance Raindrop digital PCR instruments to detect wild type or mutant alleles. All analysis was performed using the Raindrop Analyst V2 software. Of two aGCT cases tested, both showed detectable plasma ctDNA FOXL2 mutations using Raindance Raindrop digital PCR. For case 1, plasma from two subsequent time points were tested. The FOXL2 mutation was not detected in the first time point, 12 years from diagnosis, at which time the patient had relapsed disease and underwent chemotherapy. Surgery for extensive tumor burden was performed at the second time point, 6 months later, and a 16% allelic frequency of the FOXL2 mutation was detected in the plasma DNA. For case 2, two plasma samples were tested, the first from the primary surgery, the second at relapse two years later. The FOXL2 ctDNA mutation was present at 6% in the recurrent plasma sample, but not at primary diagnosis. The recurrence was originally diagnosed as a high-grade serous ovarian carcinoma, however the tumor was FOXL2 mutation positive and later re-diagnosed as a relapsed aGCT. The analysis of two cases of aGCT plasma suggests that the pathognomonic aGCT associated FOXL2 mutation is present in recurrent disease. We also show that the presence of a ctDNA FOXL2 mutation confirms the differential diagnosis of recurrent disease. This is the first proof of principle that plasma DNA may be a non-invasive method to detect recurrent aGCT. Plasma samples from a large prospective cohort with primary or recurrent aGCT will be analyzed to test the sensitive of FOXL2 ctDNA to predict tumor burden. These studies will be imperative to determine the utilization of the plasma FOXL2 ctDNA mutation in routine diagnosis. Citation Format: Melissa K. McConechy, Anniina Farkkila, Winnie Yang, Noora Andersson, Ying Ng, Leila Unkila-Kallio, Jessica N. McAlpine, Blake Gilks, Mikko Anttonen, David G. Huntsman. Circulating tumor DNA: FOXL2 402C-G mutation can be identified in plasma from adult granulosa cell tumor patients with recurrent disease. [abstract]. In: Proceedings of the 105th Annual Meeting of the American Association for Cancer Research; 2014 Apr 5-9; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2014;74(19 Suppl):Abstract nr 5610. doi:10.1158/1538-7445.AM2014-5610
Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.
Comment cette classification a été obtenuedéplier
Prédiction machine sur la base complète
Imitation des enseignantsNi prévalence calibrée, ni vérité terrain. Validation humaine à venir. Le volet Gemma est une étiquette directe du modèle pour chaque travail de la base, lue sur la notice réduite au titre. Le volet Codex est un classifieur appris des 10 348 étiquettes directes de Codex et calibré sur les taux pondérés de l'échantillon; les champs sans appui suffisant ne portent aucun appel Codex. Le mode candidate est l'union des deux volets; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont pas des étiquettes humaines.
Scores du classifieur distillé par catégorie (deux têtes)
| Catégorie | Codex | Gemma |
|---|---|---|
| Métarecherche | 0,000 | 0,001 |
| Méta-épidémiologie (sens strict) | 0,000 | 0,000 |
| Méta-épidémiologie (sens large) | 0,000 | 0,000 |
| Bibliométrie | 0,001 | 0,000 |
| Études des sciences et des technologies | 0,000 | 0,000 |
| Communication savante | 0,000 | 0,000 |
| Science ouverte | 0,000 | 0,000 |
| Intégrité de la recherche | 0,000 | 0,000 |
| Charge utile insuffisante (le modèle a refusé de juger) | 0,003 | 0,001 |
Scores machine (provisoires)
Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.
Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.
score_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découleClassification
machine, non validéePrédiction automatique; un appel candidat d’une seule source (Gemma direct ou Codex distillé), pas un consensus.
Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».