Notice bibliographique
Résumé
West Nile virus (WNV) is a mosquito-borne zoonotic arbovirus belonging to the genus Flavivirus in the family Flaviviridae. This flavivirus is found in temperate and tropical regions of the world. WNV has spread globally, with the first case in the Western Hemisphere being identified in New York City in 1999; over the next 5 years, the virus spread across the continental United States, north into Canada, and southward into the Caribbean Islands and Latin America. WNV is now considered to be an endemic pathogen in Africa, Asia, Australia, the Middle East, Europe and in the United States, which in 2012 has experienced one of its worst epidemics, when WNV was killing 286 people in Texas. \nPhylogenetic studies have identified 2 main lineages of WNV strains. In the early 2000-s strains from lineage1 were present in Africa, India, and Australia and were reponsible for outbreaks in Europe, in the Mediterranean Basin, and in North America, whereas lineage 2 strains had been reported only in sub-Saharan Africa and Madagascar.The Hungarian equine WNV outbreak reported in 2008 was the first to be caused by a lineage 2 sub-Saharan strain in Europe. The pathogenicity of this lineage 2 strain resembled that of lineage 1 strains, and its sudden spread was unpredictable. \nThe main mode of WNV transmission is via various species of mosquitoes which are the prime vector, with birds being the most commonly infected animal and serving as the prime reservoir host. Birds develop sufficient viral levels after being infected, to transmit the infection to other biting mosquitoes which in turn go on to infect other birds. In some species of birds, the infection is fatal. When the mosquitoes become less selective, -during late summer and early autumn, when migrating birds leave their previous living area-, begin feeding more readily on other animal types such as humans and horses which are considered incidental hosts. In mammals, the virus does not multiply as readily (i.e. does not develop high viremia during infection), and mosquitoes biting infected mammals are not believed to ingest sufficient virus to become infected, making mammals like humans and equines, so-called dead-end hosts. In our climatic area (Middle Europe) equine outbreaks of the disease occur according to strict seasonality between August and October. \nApproximately 80% of WNV infections in humans are subclinical, and this is very similar to horses where most infections are asymptomatic. In humans West Nile fever (WNF), which occurs in 20 percent of cases, is a febrile syndrome that causes flu-like symptoms, like fever, headaches, fatigue and muscle pain. Whether this type of syndrome exist in horses is not clear, because we only identify cases with neurologic signs and might miss these non-typical transient conditions. In humans less than 1% of the cases is severe and result in neurological disease when the central nervous system is affected. Horses are particularly sensitive to WNV with approximately 10% infected animals presenting neurological disorders. \nIn horses the disease might start with non-specific signs of general depression, loss of appetite, low-grade fever, colic-like symptoms, lameness, stiffness or poor performance. Weakness, ataxia, and paralysis, -sometimes assymetrical-, are typical features of nervous system involvement in WNV infections and these usually develop primarily in the hindquarters in previously described lineage 1 outbreaks. In many cases caused by lineage 2 viruses, these signs are more prominent in the forelimbs at the onset of the disease. Limb paralysis can affect one or two limbs or all four, the latter usually progressing into recumbency and result in poor prognosis. Skin fasciculations and muscle tremors on the face, neck, pectoral and triceps area are common. Cranial nerve abnormalities, like facial paralysis, dysphagia or vestibular symptomes can be observed less frequently. In a lineage 2 outbreak we have described head posture abnormalities, hyperexcitability, but abnormal behaviour was less common than in lineage 1 north-american outbreaks. Factors other than the strain alone may account for the clinical manifestation of disease. Individual factors of receptivity also are thought to be of major importance for the evolution and clinical expression of WNV infection. Indeed, several authors have demonstrated that variations in certain loci of the host’s genome influenced susceptibility and clinical presentation. Furthermore, the presence of antibodies against other flaviviruses is thought to play a role in determining the clinical presentation in certain areas. \nLaboratory results are non-specific and can be completely negative. In severe cases we find pronounced increases in WBC counts with neutrophilia. In most cases cerebrospinal fluid sampling (CSF) is performed in the lumbosacral region. The CSF is abnormal in most cases showing mononuclear pleocytosis with lymphocytic predominance, but in some cases, only a high protein concentration can be found. Neutrophil predominance in CSF is also a sign of poor prognosis. \nFollowing peripheral inoculation, initial WNV replication is thought to occur in skin Langerhans dendritic cells. These cells migrate to and seed draining lymph nodes, resulting in a primary viremia and subsequent infection of peripheral tissues such as the spleen and kidney. By the end of the first week, WNV is largely cleared from the serum and peripheral organs and infection of the central nervous system (CNS) is observed in a subset of immunocompetent animals. The mechanisms by which WNV and other neurotropic flaviviruses cross the blood-brain barrier remain largely unknown, although tumor necrosis factor alpha (TNF-α)-mediated changes in endothelial cell permeability may facilitate CNS entry. It is likely that WNV infects the CNS at least in part via hematogenous spread, as an increased viral burden in serum correlates with earlier viral entry into the brain. \nThe virus causes polioencephalomyelitis in horses and men. There is usually relatively mild gliosis and perivascular cuffing, lymphocytic and neutrophilic infiltration, neuronophagia, necrosis of neuros and a few scattered perivascular haemorrhages in the cerebrum, with the most severe disease located in the thalamus and hindbrain. The most severe sites of the WN neuroinvasive disease lesions can be focally distributed, but usually there is generalized inflammation. The grey matter of the spinal cord can be severely affected as well. \nThe differential diagnosis in Europe mainly includes the neurological form of rhinopneumonia of Equine Herpes Virus 1, Borna disease, and rabies. We have to exclude CNS trauma, plant and other toxicoses, bacterial meningitis, Wobbler syndrome and some degenerative disorders. In the Western Hemisphere arboviral encephalitis (e.g., Venezuelan, Eastern, and Western encephalomyelitis) and equine protozoal myeloencephalitis (Sarcosystis neurona or Neospora hughesi) have to be included in the differentials. \nThe antemortem diagnosis of acute WNV infection is based on the detection of specific IgM antibodies in serum, CSF or both by an ELISA test or an increase in IgG titers between acute-phase and convalescent sera. Virus-neutralizing antibody responses persist for longer than WNV-specific IgM levels in serum. The duration of IgM appears to be short-lived in horses and this is the reason why it is useful for identifying and differentiating recent infections from previously exposed animals. It is well known that there is an extensive cross-reactive antibody response to members of the Flavivirus genus, thus molecular tests should be performed to confirm the clinical diagnosis and identify the causative virus. Horses infected with either WNV lineage 1 or lineage 2 elicit a similar antibody profile in serum samples and there are not any notable differences in the antibody profile. \nMost data show that tests to detect WNV RNA in serum or plasma may give false-negative results due to the short duration of viraemia. Consistent with the fact that the kidney is a well-established site of active WNV replication in animals, urine samples may be more appropriate when looking for the presence of WNV, because of longer shedding and higher viral load. Whole WNV genome reconstruction is also easily achieved from the urine sample in humans. Reliability of testing urine for viral RNA in horses has not been established yet. \nWhat is going on in European countries? In Hungary WNV became endemic causing equine and human disease each year. According to previous isolations we suppose that both lineage 1 and lineage 2 strains are circulating in Hungary but only lineage 2 strains were isolated from neuroinvasive animal cases in recent years. A human outbreak of WNV infections occurred in 2010 in central Macedonia, northern Greece. WNV lineage 2 sequences were obtained from mosquitoes in sites where encephalitis cases occurred a few days before the trapping. The Greek strain showed the highest homology to Hungarian and South African strains, differing from the Russian WNV lineage 2 strain, which suggests that at least two lineage 2 strains have been introduced and established in Europe, causing severe disease to humans and horses. Notably, cases of WNV infection in Greece in 2011 occurred in areas that had not been affected in 2010. WNV infections have been reported in both humans and horses since the summer of 2008 in north-eastern Italy as well. Until 2011 only WNV lineage 1 infections have been described in the country. In 2011 Bagnarelly et al. described a human case of WNF which was confirmed to be caused by a lineage 2 virus. It also showed 99% identity to the complete genome of isolate goshawk-Hungary/04 and to the more recent Nea Santa-Greece-2010. Between July and September 2012, Barzon et al. described 13 confirmed human cases of WNV infection diagnosed in north-eastern Italy. Cases occurre
Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.
Comment cette classification a été obtenuedéplier
Prédiction machine sur la base complète
Imitation des enseignantsNi prévalence calibrée, ni vérité terrain. Validation humaine à venir. Le volet Gemma est une étiquette directe du modèle pour chaque travail de la base, lue sur la notice réduite au titre. Le volet Codex est un classifieur appris des 10 348 étiquettes directes de Codex et calibré sur les taux pondérés de l'échantillon; les champs sans appui suffisant ne portent aucun appel Codex. Le mode candidate est l'union des deux volets; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont pas des étiquettes humaines.
Scores du classifieur distillé par catégorie (deux têtes)
| Catégorie | Codex | Gemma |
|---|---|---|
| Métarecherche | 0,001 | 0,002 |
| Méta-épidémiologie (sens strict) | 0,001 | 0,000 |
| Méta-épidémiologie (sens large) | 0,000 | 0,000 |
| Bibliométrie | 0,001 | 0,001 |
| Études des sciences et des technologies | 0,001 | 0,000 |
| Communication savante | 0,002 | 0,001 |
| Science ouverte | 0,001 | 0,001 |
| Intégrité de la recherche | 0,001 | 0,001 |
| Charge utile insuffisante (le modèle a refusé de juger) | 0,029 | 0,015 |
Scores machine (provisoires)
Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.
Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.
score_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découleClassification
machine, non validéePrédiction automatique; un appel candidat d’une seule source (Gemma direct ou Codex distillé), pas un consensus.
Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».