Abstract B126: Optimization of culture conditions for the establishment of de novo renal cell carcinoma cell lines.
Notice bibliographique
Résumé
Abstract Renal cell carcinoma, a common malignancy of the genitourinary tract, accounts for approximately 85% of all renal malignancies. Clear cell RCC (ccRCC) is the most common subtype and has a high level of cellular heterogeneity, with a characteristic mutation in the von Hippel-Lindau (Vhl) tumor suppressor gene in a majority of ccRCC cases. While extirpative surgery is most often curative in tumors restricted to the kidney parenchyma, locally advanced and metastatic ccRCC is resistant to conventional chemotherapeutics and radiation therapy. Several aspects of ccRCC biology, including mechanisms of progression, tumor heterogeneity, and identification of biomarkers and candidate therapeutic targets are being examined. However, these studies typically use cell lines cultured in serum-containing media and passaged for extended periods of time. These lines acquire mutations in vitro, irreversibly corrupting their genotype and phenotype compared to the corresponding patient's tumor. Recent studies in the glioma field have shown that cell lines established in serum-free media maintained their ex vivo phenotype and genotype, and enabled more relevant functional screens like RNA knockdown and chemical cytotoxicity screens. More recently, similar approaches have been used to derive more biologically relevant serum-free cancer cell lines in other cancers, but not in ccRCC. We established a number of lines directly from patient tumors using traditional fetal bovine serum containing culture conditions in ambient (20%) oxygen versus serum-free media containing defined growth factor under 2% oxygen to minimize reactive-oxygen-species-induced mutations. In order to validate both their origin as cancer cells, and maintenance of their genotype and phenotype during cell culture, we used a panel of ten matched cell line pairs (serum and serum-free) and assessed a) cell line and tumor fidelity by STR profiling, b) genomic conservation by copy number variation, and c) Vhl mutation status. All of the cell lines were found to match the primary patient tissue by STR profiling. Two of the ten lines grown in serum recapitulated the patient tumor Vhl mutation, but none of the lines grown in serum-free media had any mutations characteristic of the tumour, and were thus derived from contaminating normal kidney epithelial cells. These findings suggest that normal cells out-grow ccRCC cells under both culture conditions, but serum-containing media may be more permissive for ccRCC growth. We did not observe any accumulation of additional genetic changes in either culture condition. Our Vhl-mutant cell line fails to survive in the serum-free culture conditions used here, thus providing us with a tool for the optimization of serum-free growth conditions and identification of factors necessary for in vitro growth and survival of ccRCC cells. These conditions will then be used to derive additional lines that may represent more accurate in vitro models of ccRCC. Furthermore, molecular characterization of the matched wild type and mutant lines will allow us to identify markers to more easily distinguish normal cells from cancer cells in vitro. We believe it is important to identify a defined serum-free culture condition that supports ccRCC cell growth, as this will lead to identification of molecules that are essential for ccRCC cell growth and survival, and thus act as potential therapeutic targets. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the AACR-NCI-EORTC International Conference: Molecular Targets and Cancer Therapeutics; 2011 Nov 12-16; San Francisco, CA. Philadelphia (PA): AACR; Mol Cancer Ther 2011;10(11 Suppl):Abstract nr B126.
Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.
Comment cette classification a été obtenuedéplier
Prédiction machine sur la base complète
Imitation des enseignantsNi prévalence calibrée, ni vérité terrain. Validation humaine à venir. Le volet Gemma est une étiquette directe du modèle pour chaque travail de la base, lue sur la notice réduite au titre. Le volet Codex est un classifieur appris des 10 348 étiquettes directes de Codex et calibré sur les taux pondérés de l'échantillon; les champs sans appui suffisant ne portent aucun appel Codex. Le mode candidate est l'union des deux volets; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont pas des étiquettes humaines.
Scores du classifieur distillé par catégorie (deux têtes)
| Catégorie | Codex | Gemma |
|---|---|---|
| Métarecherche | 0,001 | 0,001 |
| Méta-épidémiologie (sens strict) | 0,001 | 0,000 |
| Méta-épidémiologie (sens large) | 0,001 | 0,001 |
| Bibliométrie | 0,001 | 0,001 |
| Études des sciences et des technologies | 0,001 | 0,000 |
| Communication savante | 0,001 | 0,000 |
| Science ouverte | 0,001 | 0,001 |
| Intégrité de la recherche | 0,001 | 0,001 |
| Charge utile insuffisante (le modèle a refusé de juger) | 0,003 | 0,004 |
Scores machine (provisoires)
Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.
Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.
score_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découleClassification
machine, non validéePrédiction automatique; un appel candidat d’une seule source (Gemma direct ou Codex distillé), pas un consensus.
Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».