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Enregistrement W2047251105 · doi:10.1097/ede.0000000000000255

Time-Dependent Bias in Hepatitis C Classification

2015· letter· en· W2047251105 sur OpenAlexafffundabout
Jennifer Gillis, Curtis Cooper, Ann N. Burchell, Sandra Gardner, Michael Manno, Tony Mazzulli, Sean B. Rourke, Janet Raboud

Notice bibliographique

RevueEpidemiology · 2015
Typeletter
Langueen
DomaineMedicine
ThématiqueHepatitis C virus research
Établissements canadiensOntario HIV Treatment NetworkToronto Rehabilitation InstituteToronto General HospitalUniversity of TorontoUniversity Health NetworkUniversity of OttawaOttawa HospitalMinistry of Health and Long Term Care
Organismes subventionnairesOntario HIV Treatment Network
Mots-clésMedicineHepatitis CHepatitis C virusHepatitisInternal medicineCohortImmunologyIncidence (geometry)Hepatitis BVirologyVirus

Résumé

récupéré en direct d'OpenAlex

To the Editors: Implicit assumptions that hepatitis C virus infection antedates that of HIV and that clearance of hepatitis C is rare in HIV-positive individuals has led to many studies treating hepatitis C infection as time invariant. Changes in patterns of acquisition and clearance of the hepatitis C virus no longer support such assumptions. Increasingly, HIV-positive individuals are infected with hepatitis C virus after HIV,1–3 clearance of the hepatitis C virus is more likely with the availability of direct-acting antivirals4, and testing guidelines for hepatitis C virus now include all HIV-positive patients regardless of perceived risk5,6. Therefore, treatment of hepatitis C-positivity as time invariant can lead to time-dependent bias in the estimated impact of hepatitis C infection on clinical outcomes. To assess potential for time-dependent bias, we evaluated the incidence of hepatitis C infection after antiretroviral therapy (ART) initiation and the rate of clearance using data from HIV-positive participants who had started ART and were enrolled in the Ontario HIV Treatment Network Cohort Study, the details of which are available in the eAppendix (https://links.lww.com/EDE/A873). We then examined the impact of time invariant and time-updated hepatitis C classification on the estimated risk of mortality using multivariable proportional hazards models of time from ART initiation to death hypothesizing that treatment of hepatitis C-positivity as time invariant would lead to underestimation of the risk of death. Hepatitis C-positivity was identified from anti-hepatitis C antibody and/or hepatitis C virus RNA laboratory test results obtained from linkage with the Public Health of Ontario Laboratories, through which virtually all confirmatory hepatitis C virus laboratory testing occurs. Participants who had never been tested for hepatitis C virus were considered to be hepatitis C virus-negative in all analyses. Data were left-truncated between ART initiation and cohort enrolment. Additional details are available in the eAppendix (https://links.lww.com/EDE/A873). As of December 2010, 4,555 study participants had initiated ART. The median duration of follow-up was 2.32 years (interquartile range 1.36–8.01); 701 participants died. Definitive hepatitis C virus test results were available for 3,872 individuals (85%); 735 individuals tested hepatitis C-positive. Seventy-nine participants (11%) seroconverted and 120 participants (16%) cleared the virus. Incidence of mortality did not differ by hepatitis C status when it was considered time invariant (Figure). Correctly attributing person years of follow-up to hepatitis C virus-negative classification before hepatitis C seroconversion led to a significant difference in incidence of mortality. This difference became more pronounced after successively accounting for misclassification after clearance and before hepatitis C testing (Figure).FIGURE: Incidence of death by hepatitis C (HCV) status after successively accounting for excess person-years of follow-up attributed to hepatitis C infection when HCV status is considered time-fixed. Person-years of follow-up were re-appropriated successively; accounted for time before seroconversion, then time after clearance of the virus, and finally for the years before a hepatitis C test.The hazard ratio of death associated with time-updated hepatitis C- positive status was 1.98 (95% confidence interval = 1.53–2.57) after adjusting for age, sex, race, injection drug use as risk factor, hepatitis B virus positivity, baseline smoking status, first regimen type, and time-updated CD4 count and viral load. Classification of hepatitis C infection as time invariant resulted in an attenuation of the effect (adjusted hazard ratio = 1.38 [95% confidence interval = 1.07–1.77]), demonstrating that the assumption that hepatitis C infection is time invariant in HIV-positive individuals can lead to substantial bias. This topic has been addressed in the statistical literature7,8 and in relation to other medical research but needs to be highlighted in infectious disease clinical research due to the frequency of time-varying exposures in this setting. In particular, assessing cumulative exposure to the hepatitis C virus, or consideration of hepatitis C status as negative, positive or past infection may be more appropriate to address the complex nature of viral hepatitis coinfection with HIV. Limitations of our study include incomplete and variable testing frequency for the hepatitis C virus, potential false positive and negative tests, and a lack of confirmatory RNA testing for all antibody positive results. However, the potential for bias has been demonstrated using a large, long-standing cohort of a diverse HIV-positive population. Therefore, we advocate the use of time-updated hepatits C status, where possible, or the impact of such time-dependent bias should be expressly discussed, where not. ACKNOWLEDGEMENTS The names of the OHTN Cohort Study Team and other acknowledgements are provided in the eAppendix. Jennifer Gillis Toronto General Research Institute University Health Network Toronto, ON, Canada Curtis Cooper University of Ottawa The Ottawa Hospital Research Institute Ottawa, ON, Canada Ann N. Burchell Sandra Gardner University of Toronto Toronto, ON, Canada Michael Manno Ontario HIV Treatment Network Toronto, ON, Canada Tony Mazzulli Sean B. Rourke University of Toronto Toronto, ON, Canada Janet M. Raboud Toronto General Research Institute Support, Systems and Outcomes Toronto General Hospital Toronto, ON Canada [email protected] and the OHTN Cohort Study Group

Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.

Comment cette classification a été obtenuedéplier

Prédiction distillée sur la base complète

Imitation des enseignants

Ni prévalence calibrée, ni vérité terrain. Validation humaine à venir. Apprise à partir de 10 348 étiquettes directes de Codex et de 10 348 étiquettes directes de Gemma. Le mode candidate est l'union des têtes enseignantes seuillées; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont ni des étiquettes humaines ni des étiquettes directes de modèles de pointe.

score de la tête « metaresearch » (Codex)0,005
score de la tête « metaresearch » (Gemma)0,020
Version: codex-gemma-dda1882f352aStatut de validation: machine_predicted_unvalidated
Catégories candidatesMétarecherche, Méta-épidémiologie (sens strict), Intégrité de la recherche, Charge utile insuffisante (le modèle a refusé de juger)
Catégories consensuellesIntégrité de la recherche, Charge utile insuffisante (le modèle a refusé de juger)
DomaineSignal candidat: aucune · Signal consensuel: aucune
Devis d'étudeSignal candidat: Sans objet · Signal consensuel: Sans objet
GenreSignal candidat: Commentaire · Signal consensuel: Commentaire
Score de désaccord entre enseignants0,107
Score d'incertitude au seuil1,000

Scores Codex et Gemma par catégorie

CatégorieCodexGemma
Métarecherche0,0050,020
Méta-épidémiologie (sens strict)0,0000,000
Méta-épidémiologie (sens large)0,0020,000
Bibliométrie0,0010,000
Études des sciences et des technologies0,0000,000
Communication savante0,0000,000
Science ouverte0,0000,000
Intégrité de la recherche0,0020,004
Charge utile insuffisante (le modèle a refusé de juger)0,0020,009

Scores machine (provisoires)

Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.

Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.

Tête enseignante Opus0,324
Tête enseignante GPT0,430
Écart entre enseignants0,105 · la distance entre les deux têtes enseignantes sur ce seul travail
Statut de validationscore_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découle

Classification

machine, non validée

Prédiction automatique; les deux têtes enseignantes s’accordent sur ce qui est montré ici.

Devis d'étudeSans objet
Domainenon disponible
GenreCommentaire

Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».

En bref

Citations2
Publié2015
Routes d'admission3
Résumé présentoui

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