Defining the Structural Basis of Human Plasminogen Binding by Streptococcal Surface Enolase
Notice bibliographique
Résumé
The flesh-eating bacterium group A Streptococcus (GAS) binds and activates human plasminogen, promoting invasive disease. Streptococcal surface enolase (SEN), a glycolytic pathway enzyme, is an identified plasminogen receptor of GAS. Here we used mass spectrometry (MS) to confirm that GAS SEN is octameric, thereby validating in silico modeling based on the crystal structure of Streptococcus pneumoniae α-enolase. Site-directed mutagenesis of surface-located lysine residues (SENK252 + 255A, SENK304A, SENK334A, SENK344E, SENK435L, and SENΔ434–435) was used to examine their roles in maintaining structural integrity, enzymatic function, and plasminogen binding. Structural integrity of the GAS SEN octamer was retained for all mutants except SENK344E, as determined by circular dichroism spectroscopy and MS. However, ion mobility MS revealed distinct differences in the stability of several mutant octamers in comparison with wild type. Enzymatic analysis indicated that SENK344E had lost α-enolase activity, which was also reduced in SENK334A and SENΔ434–435. Surface plasmon resonance demonstrated that the capacity to bind human plasminogen was abolished in SENK252 + 255A, SENK435L, and SENΔ434–435. The lysine residues at positions 252, 255, 434, and 435 therefore play a concerted role in plasminogen acquisition. This study demonstrates the ability of combining in silico structural modeling with ion mobility-MS validation for undertaking functional studies on complex protein structures. The flesh-eating bacterium group A Streptococcus (GAS) binds and activates human plasminogen, promoting invasive disease. Streptococcal surface enolase (SEN), a glycolytic pathway enzyme, is an identified plasminogen receptor of GAS. Here we used mass spectrometry (MS) to confirm that GAS SEN is octameric, thereby validating in silico modeling based on the crystal structure of Streptococcus pneumoniae α-enolase. Site-directed mutagenesis of surface-located lysine residues (SENK252 + 255A, SENK304A, SENK334A, SENK344E, SENK435L, and SENΔ434–435) was used to examine their roles in maintaining structural integrity, enzymatic function, and plasminogen binding. Structural integrity of the GAS SEN octamer was retained for all mutants except SENK344E, as determined by circular dichroism spectroscopy and MS. However, ion mobility MS revealed distinct differences in the stability of several mutant octamers in comparison with wild type. Enzymatic analysis indicated that SENK344E had lost α-enolase activity, which was also reduced in SENK334A and SENΔ434–435. Surface plasmon resonance demonstrated that the capacity to bind human plasminogen was abolished in SENK252 + 255A, SENK435L, and SENΔ434–435. The lysine residues at positions 252, 255, 434, and 435 therefore play a concerted role in plasminogen acquisition. This study demonstrates the ability of combining in silico structural modeling with ion mobility-MS validation for undertaking functional studies on complex protein structures. Streptococcus pyogenes (group A Streptococcus, GAS) 8The abbreviations used are: GASgroup A StreptococcusSENsurface enolaseMSmass spectrometryIMion mobilityESIelectrospray mass ionizationToftime-of-flightmbarmillibar. 8The abbreviations used are: GASgroup A StreptococcusSENsurface enolaseMSmass spectrometryIMion mobilityESIelectrospray mass ionizationToftime-of-flightmbarmillibar. is a common bacterial pathogen, causing over 700 million human disease episodes each year (1Carapetis J.R. Steer A.C. Mulholland E.K. Weber M. Lancet Infect. Dis. 2005; 5: 685-694Abstract Full Text Full Text PDF PubMed Scopus (1882) Google Scholar). These range from serious life-threatening invasive diseases including necrotizing fasciitis and streptococcal toxic shock-like syndrome to non-invasive infections like pharyngitis and pyoderma. Invasive disease, in combination with postinfection immune sequelae including rheumatic heart disease and acute poststreptococcal glomerulonephritis, account for over half a million deaths each year (1Carapetis J.R. Steer A.C. Mulholland E.K. Weber M. Lancet Infect. Dis. 2005; 5: 685-694Abstract Full Text Full Text PDF PubMed Scopus (1882) Google Scholar). Although a resurgence of GAS invasive infections has occurred in western countries since the mid-1980s, disease burden is much greater in developing countries and indigenous populations of developed nations, where GAS infections are endemic (2Cunningham M.W. Clin. Microbiol. Rev. 2000; 13: 470-511Crossref PubMed Scopus (1731) Google Scholar, 3Tart A.H. Walker M.J. Musser J.M. Trends Microbiol. 2007; 15: 318-325Abstract Full Text Full Text PDF PubMed Scopus (93) Google Scholar, 4Carapetis J.R. Walker A.M. Hibble M. Sriprakash K.S. Currie B.J. Epidemiol. Infect. 1999; 122: 59-65Crossref PubMed Scopus (76) Google Scholar). group A Streptococcus surface enolase mass spectrometry ion mobility electrospray mass ionization time-of-flight millibar. group A Streptococcus surface enolase mass spectrometry ion mobility electrospray mass ionization time-of-flight millibar. GAS is able to bind human plasminogen and activate the captured zymogen to the serine protease plasmin (5McArthur J.D. McKay F.C. Ramachandran V. Shyam P. Cork A.J. Sanderson-Smith M.L. Cole J.N. Ringdahl U. Sjöbring U. Ranson M. Walker M.J. FASEB J. 2008; 22: 3146-3153Crossref PubMed Scopus (49) Google Scholar, 6Walker M.J. McArthur J.D. McKay F. Ranson M. Trends Microbiol. 2005; 13: 308-313Abstract Full Text Full Text PDF PubMed Scopus (88) Google Scholar, 7Sanderson-Smith M.L. Walker M.J. Ranson M. J. Biol. Chem. 2006; 281: 25965-25971Abstract Full Text Full Text PDF PubMed Scopus (41) Google Scholar, 8Sanderson-Smith M.L. Dowton M. Ranson M. Walker M.J. J. Bacteriol. 2007; 189: 1435-1440Crossref PubMed Scopus (57) Google Scholar, 9Pancholi V. Fischetti V.A. J. Exp. Med. 1992; 176: 415-426Crossref PubMed Scopus (505) Google Scholar, 10Pancholi V. Chhatwal G.S. Int. J. Med. Microbiol. 2003; 293: 391-401Crossref PubMed Scopus (232) Google Scholar, 11Kuusela P. Ullberg M. Saksela O. Kronvall G. Infect. Immun. 1992; 60: 196-201Crossref PubMed Google Scholar, 12Winram S.B. Lottenberg R. Microbiology. 1998; 144: 2025-2035Crossref PubMed Scopus (39) Google Scholar, 13D'Costa S.S. Boyle M.D.P. Microb. Pathog. 1998; 24: 341-349Crossref PubMed Scopus (23) Google Scholar, 14Wang H. Lottenberg R. Boyle M.D.P. J. Infect. Dis. 1995; 171: 85-92Crossref PubMed Scopus (47) Google Scholar, 15McKay F.C. McArthur J.D. Sanderson-Smith M.L. Gardam S. Currie B.J. Sriprakash K.S. Fagan P.K. Towers R.J. Batzloff M.R. Chhatwal G.S. Ranson M. Walker M.J. Infect. Immun. 2004; 72: 364-370Crossref PubMed Scopus (67) Google Scholar, 16Kapur V. Kanjilal S. Hamrick M.R. Li L.L. Whittam T.S. Sawyer S.A. Musser J.M. Mol. Microbiol. 1995; 16: 509-519Crossref PubMed Scopus (44) Google Scholar, 17Walker M.J. Hollands A. Sanderson-Smith M.L. Cole J.N. Kirk J.K. Henningham A. McArthur J.D. Dinkla K. Aziz R.K. Kansal R.G. Simpson A.J. Buchanan J.T. Chhatwal G.S. Kotb M. Nizet V. Nat. Med. 2007; 13: 981-985Crossref PubMed Scopus (310) Google Scholar). The capacity of GAS to do this plays a critical role in virulence and invasive disease initiation (3Tart A.H. Walker M.J. Musser J.M. Trends Microbiol. 2007; 15: 318-325Abstract Full Text Full Text PDF PubMed Scopus (93) Google Scholar, 17Walker M.J. Hollands A. Sanderson-Smith M.L. Cole J.N. Kirk J.K. Henningham A. McArthur J.D. Dinkla K. Aziz R.K. Kansal R.G. Simpson A.J. Buchanan J.T. Chhatwal G.S. Kotb M. Nizet V. Nat. Med. 2007; 13: 981-985Crossref PubMed Scopus (310) Google Scholar, 18Sun H. Ringdahl U. Homeister J.W. Fay W.P. Engleberg N.C. Yang A.Y. Rozek L.S. Wang X. Sjöbring U. Ginsburg D. Science. 2004; 305: 1283-1286Crossref PubMed Scopus (313) Google Scholar, 19Sanderson-Smith M.L. Dinkla K. Cole J.N. Cork A.J. Maamary P.G. McArthur J.D. Chhatwal G.S. Walker M.J. FASEB J. 2008; 22: 2715-2722Crossref PubMed Scopus (62) Google Scholar). The plasminogen activation system in humans is an important and highly regulated process that is responsible for breakdown of extracellular matrix components, dissolution of blood clots, and cell migration (20Parry M.A. Zhang X.C. Bode I. Trends Biochem. Sci. 2000; 25: 53-59Abstract Full Text Full Text PDF PubMed Scopus (118) Google Scholar, 21Saksela O. Rifkin D.B. Annu. Rev. Cell Biol. 1988; 4: 93-126Crossref PubMed Scopus (712) Google Scholar). Plasminogen is a 92-kDa zymogen that circulates in human plasma at a concentration of 2 μm (22Danø K. Andreasen P.A. Grøndahl-Hansen J. Kristensen P. Nielsen L.S. Skriver L. Adv. Cancer Res. 1985; 44: 139-266Crossref PubMed Scopus (2289) Google Scholar). It consists of a binding region of five homologous triple loop kringle domains and an N-terminal serine protease domain that flank the Arg561–Val562 site (23Ponting C.P. Marshall J.M. Cederholm-Williams S.A. Blood Coagul. Fibrinolysis. 1992; 3: 605-614Crossref PubMed Scopus (199) Google Scholar), where it is cleaved by tissue plasminogen activator and urokinase plasminogen activator to yield the active protease plasmin (20Parry M.A. Zhang X.C. Bode I. Trends Biochem. Sci. 2000; 25: 53-59Abstract Full Text Full Text PDF PubMed Scopus (118) Google Scholar, 23Ponting C.P. Marshall J.M. Cederholm-Williams S.A. Blood Coagul. Fibrinolysis. 1992; 3: 605-614Crossref PubMed Scopus (199) Google Scholar). GAS also has the ability to activate human plasminogen by secreting the virulence determinant streptokinase. Streptokinase forms stable complexes with plasminogen or plasmin, both of which exhibit plasmin activity (20Parry M.A. Zhang X.C. Bode I. Trends Biochem. Sci. 2000; 25: 53-59Abstract Full Text Full Text PDF PubMed Scopus (118) Google Scholar, 24Reddy K.N. Markus G. J. Biol. Chem. 1972; 247: 1683-1691Abstract Full Text PDF PubMed Google Scholar). Activation of plasminogen by the plasmin(ogen)-streptokinase complex circumvents regulation by the host plasminogen activation inhibitors, α2-antiplasmin and α2-macroglobulin (11Kuusela P. Ullberg M. Saksela O. Kronvall G. Infect. Immun. 1992; 60: 196-201Crossref PubMed Google Scholar, 20Parry M.A. Zhang X.C. Bode I. Trends Biochem. Sci. 2000; 25: 53-59Abstract Full Text Full Text PDF PubMed Scopus (118) Google Scholar). GAS can bind the plasmin(ogen)-streptokinase complex and/or plasmin(ogen) directly via plasmin(ogen) receptors at the bacterial cell surface (6Walker M.J. McArthur J.D. McKay F. Ranson M. Trends Microbiol. 2005; 13: 308-313Abstract Full Text Full Text PDF PubMed Scopus (88) Google Scholar). These receptors include the plasminogen-binding group A streptococcal M-like protein (PAM) (25Berge A. Sjöbring U. J. Biol. Chem. 1993; 268: 25417-25424Abstract Full Text PDF PubMed Google Scholar), the PAM-related protein (19Sanderson-Smith M.L. Dinkla K. Cole J.N. Cork A.J. Maamary P.G. McArthur J.D. Chhatwal G.S. Walker M.J. FASEB J. 2008; 22: 2715-2722Crossref PubMed Scopus (62) Google Scholar), glyceraldehyde-3-phosphate dehydrogenase (GAPDH; also known as streptococcal plasmin receptor, Plr, or streptococcal surface dehydrogenase) (9Pancholi V. Fischetti V.A. J. Exp. Med. 1992; 176: 415-426Crossref PubMed Scopus (505) Google Scholar, 26Lottenberg R. Broder C.C. Boyle M.D. Kain S.J. Schroeder B.L. Curtiss 3rd, R. J. Bacteriol. 1992; 174: 5204-5210Crossref PubMed Google Scholar), and streptococcal surface enolase (SEN or α-enolase) (27Pancholi V. Fischetti V.A. J. Biol. Chem. 1998; 273: 14503-14515Abstract Full Text Full Text PDF PubMed Scopus (450) Google Scholar). Interactions with these GAS receptors occurs via lysine-binding sites within the kringle domains of plasminogen (6Walker M.J. McArthur J.D. McKay F. Ranson M. Trends Microbiol. 2005; 13: 308-313Abstract Full Text Full Text PDF PubMed Scopus (88) Google Scholar). In addition to its ability to bind human plasminogen, SEN is primarily the glycolytic enzyme that converts 2-phosphoglycerate to phosphoenolpyruvate (27Pancholi V. Fischetti V.A. J. Biol. Chem. 1998; 273: 14503-14515Abstract Full Text Full Text PDF PubMed Scopus (450) Google Scholar, 28Pancholi V. Cell. Mol. Life Sci. 2001; 58: 902-920Crossref PubMed Scopus (710) Google Scholar, 29Wold F. Boyer P.D. The Enzymes, Vol. 5. 3rd Ed. Academic Press, New York1971: 499-538Google Scholar). SEN is abundantly expressed in the cytosol of most bacterial species but has also been identified as a surface-located protein in GAS and other bacteria including pneumococci, despite lacking classical cell surface protein motifs such as a signal sequence, membrane-spanning domain, or cell-wall anchor motif (27Pancholi V. Fischetti V.A. J. Biol. Chem. 1998; 273: 14503-14515Abstract Full Text Full Text PDF PubMed Scopus (450) Google Scholar, 28Pancholi V. Cell. Mol. Life Sci. 2001; 58: 902-920Crossref PubMed Scopus (710) Google Scholar, 30Cole J.N. Ramirez R.D. Currie B.J. Cordwell S.J. Djordjevic S.P. Walker M.J. Infect. Immun. 2005; 73: 3137-3146Crossref PubMed Scopus (91) Google Scholar, 31Bergmann S. Hammerschmidt S. Thromb. Haemost. 2007; 98: 512-520Crossref PubMed Scopus (146) Google Scholar). The interaction between SEN and plasminogen is reported to be facilitated by the two C-terminal lysine residues at positions 434 and 435 (27Pancholi V. Fischetti V.A. J. Biol. Chem. 1998; 273: 14503-14515Abstract Full Text Full Text PDF PubMed Scopus (450) Google Scholar, 32Derbise A. Song Y.P. Parikh S. Fischetti V.A. Pancholi V. Infect. Immun. 2004; 72: 94-105Crossref PubMed Scopus (96) Google Scholar). In contrast, an internal binding motif containing lysines at positions 252 and 255 in the closely related α-enolase of Streptococcus pneumoniae has been shown to play a pivotal role in the acquisition of plasminogen in this bacterial species (33Bergmann S. Wild D. Diekmann O. Frank R. Bracht D. Chhatwal G.S. Hammerschmidt S. Mol. Microbiol. 2003; 49: 411-423Crossref PubMed Scopus (191) Google Scholar). The octameric pneumococcal α-enolase structure consists of a tetramer of dimers. Hence, potential binding sites could be buried in the interface between subunits. In fact, the crystal structure of S. pneumoniae α-enolase revealed that the two C-terminal lysine residues are significantly less exposed than the internal plasminogen-binding motif (34Ehinger S. Schubert S. Hammerschmidt S. J. Mol. Biol. 2004; PubMed Scopus Google Scholar). In this we an in silico of GAS based on the pneumococcal octameric α-enolase crystal and this ion mobility mass spectrometry Site-directed mutagenesis by structural and functional revealed that plays a role in structural integrity and enzymatic we that the plasminogen-binding motif residues and and the C-terminal and residues are in the GAS SEN structure and play a concerted role in the binding of human The an N-terminal SEN from the GAS A. Song Y.P. Parikh S. Fischetti V.A. Pancholi V. Infect. Immun. 2004; 72: 94-105Crossref PubMed Scopus (96) Google was used to as A. Song Y.P. Parikh S. Fischetti V.A. Pancholi V. Infect. Immun. 2004; 72: 94-105Crossref PubMed Scopus (96) Google Scholar). residues of within SEN with or by mutagenesis in and M.L. Dowton M. Ranson M. Walker M.J. J. Bacteriol. 2007; 189: 1435-1440Crossref PubMed Scopus (57) Google Scholar). analysis was used to confirm in and and M.L. Dowton M. Ranson M. Walker M.J. J. Bacteriol. 2007; 189: 1435-1440Crossref PubMed Scopus (57) Google Scholar). an and analysis and SEN mutant and in with at to an at of was as J.N. Sanderson-Smith M.L. Cork A.J. Henningham A. F. Ranson M. McArthur J.D. Walker M.J. R. Chhatwal G.S. of Press, Scholar). The and protein concentration was determined a protein on a mass which had been for mass F. J. A. R. Chem. PubMed Scopus Google a 2 of a of each protein in from to as from a potential of and and the was to V. cell was to to to and the in their a and and spectrometry was on a system K. K. Int. J. 2007; Scopus Google Scholar), with a A.M. S.J. Nat. 2008; 3: PubMed Scopus Google Scholar). The and a in the The used and in the and The in the the and and the MS was are shown with and The for protein was a K. J. D. on for Scholar). M. I. S. Res. 2008; PubMed Scopus Google identified α-enolase from S. pneumoniae as the protein with a known structure most closely related to GAS SEN at the The octameric of S. pneumoniae α-enolase was crystal with the This octameric structure was used to the structure of GAS SEN with the M.A. D. U. A. Sci. 2007; 2 Google Scholar). The with the was The of GAS SEN residues as A.M. S.J. Nat. 2008; 3: PubMed Scopus Google the of J.M. J. Chem. Scopus Google Scholar). on a at as A.M. Walker M.J. J. 2008; PubMed Scopus Google Scholar). of the to structure was the Biochem. 2000; PubMed Scopus Google in the A. L. PubMed Scopus Google Scholar). from the region with a of used with for this The activity of the SEN mutants was with the protein by the of 2-phosphoglycerate to The was as A. Song Y.P. Parikh S. Fischetti V.A. Pancholi V. Infect. Immun. 2004; 72: 94-105Crossref PubMed Scopus (96) Google Scholar). The of human plasminogen was from human plasma as M. Batzloff M. Sriprakash K.S. Dowton M. Ranson M. Walker M.J. J. Biol. Chem. 2006; 281: Full Text Full Text PDF PubMed Scopus Google Scholar). was and protein concentration was determined a protein The binding of and mutant SEN to was a μm in was at to yield of of SEN was at in a of and and between SEN with at by at could the the to the of the SEN and mass the of SEN to bind plasminogen was in two and on two binding for mutant and analysis of SEN with human was as M. Batzloff M. Sriprakash K.S. Dowton M. Ranson M. Walker M.J. J. Biol. Chem. 2006; 281: Full Text Full Text PDF PubMed Scopus Google Scholar). plasminogen and used as and The structure of SEN was by of in silico and an in silico of octameric GAS SEN based on the known crystal structure of S. pneumoniae α-enolase (34Ehinger S. Schubert S. Hammerschmidt S. J. Mol. Biol. 2004; PubMed Scopus Google Scholar). The for this octamer was to be This was by J.M. J. Chem. Scopus Google Scholar), for modeling protein A.M. S.J. Nat. 2008; 3: PubMed Scopus Google Scholar). this the structure and of the protein in the thereby in a GAS we expressed and the protein a at the MS of SEN where of the is Biol. 2006; 16: PubMed Scopus Google a of in the range to of to a mass an mass of with the mass of the octamer for SEN and revealed for the of and for such is we an based on the at which are the of the cell by the K. J. D. on for Scholar). this of we a of for octameric SEN of the A of SEN at and a primarily structure of the that the structure which with the of the in silico functional analysis of SEN to the enzymatic activity and ability to bind human The α-enolase activity of SEN of 2-phosphoglycerate to was at The of phosphoenolpyruvate for SEN was of protein Surface plasmon resonance was used to the plasminogen binding ability of SEN in a was a and SEN was to over the for such a SEN binding occurred at a that was by mass and to Site-directed mutagenesis was to examine the role of lysine residues in the structural integrity and of GAS residues for analysis based on their known role in plasminogen binding by GAS SEN and SENΔ434–435) A. Song Y.P. Parikh S. Fischetti V.A. Pancholi V. Infect. Immun. 2004; 72: 94-105Crossref PubMed Scopus (96) Google or S. pneumoniae α-enolase (SENK252 + (33Bergmann S. Wild D. Diekmann O. Frank R. Bracht D. Chhatwal G.S. Hammerschmidt S. Mol. Microbiol. 2003; 49: 411-423Crossref PubMed Scopus (191) Google Scholar), on their in α-enolase G. V. I. A. S. S. A. J. J. Mol. Biol. 2004; PubMed Scopus (57) Google Scholar), or on in the C-terminal domain of the GAS SEN and of these lysine residues was to be in the structural of the GAS SEN of the mutant except for SENK344E to the of the as from the of at and in their that from in the to the or of lysine all mutants retained the octameric structural of SEN and SENK344E was in two as by the within from the as as a of at of A of these revealed that the SENK344E octamer was in and this to be a than a of in the as the is of a protein F. Chem. 2003; PubMed Scopus Google Scholar), and occurs via F. Chem. Biol. 2006; 13: Full Text Full Text PDF PubMed Scopus Google Scholar). of an at in structural of each of the mutants and the of the at the The of SEN is in on the SEN mutant in each that differences are The had the of or the octamer to that of the Structural integrity was for all mutants except SENK344E, which a of structural with its and species than the octamer The octameric species a greater which is responsible for the the other SENK252 + and SENK334A, SENK435L, and in to the These differences can be of to the structure of the protein in or an of the to structural that as a of activation J. PubMed Scopus Google Scholar). of α-enolase enzymatic activity and plasminogen binding ability by and surface plasmon resonance was used for functional comparison of SEN mutants with the Enzymatic activity was retained for SENK252 + and was reduced in SENK334A and and was abolished in SENK344E and mutant forms of SEN with human that all mutants plasminogen except for and A and the plasminogen binding ability of the SEN mutants in was surface plasmon and SENK334A to wild SENK344E plasminogen binding This is to the of binding less from mass and the of the binding also this The ability to bind human was for SENK252 + 255A, SENK435L, and SEN These that plasminogen with both lysine + 255 and 434 + in GAS The crystal structure of S. pneumoniae determined at 2 revealed an octameric structure (34Ehinger S. Schubert S. Hammerschmidt S. J. Mol. Biol. 2004; PubMed Scopus Google Scholar). In the GAS SEN lysines 252 and 255 are in a loop at the of the octameric protein 434 and 435 are on the surface of the a interface in the of their surface of these lysines be to structural with and MS and are also exposed on the on a between the and contrast, lysine is in a region of the protein buried at the active site at the of the to the with the of the SENK344E on structure and enzymatic activity G. V. I. A. S. S. A. J. J. Mol. Biol. 2004; PubMed Scopus (57) Google Scholar). are for the structural analysis of complex protein been acquisition of the of protein complexes include P. P. O. 2001; PubMed Scopus Google and A. J. P. P. 2001; PubMed Scopus Google and the bacterial M.A. Zhang A. J.M. Science. 2005; PubMed Scopus Google Scholar). However, to the acquisition of structural for include the of of the protein complex and the of the protein S. Biol. PubMed Scopus Google Scholar, M. G. Biol. 2005; 15: PubMed Scopus Google Scholar). In the of in silico protein modeling can be known structural of related protein as A. V.A. U. A.C. M.A. A. Res. 2003; PubMed Scopus Google Scholar). The validation of in protein a by In the of MS has a for the of protein in the of protein and the of Chem. Rev. 2007; PubMed Scopus Google Scholar, H. A. 2006; PubMed Scopus Google Scholar). A addition to the of MS is the of ion mobility to mass which the of protein complexes based on their in a mobility cell A.M. S.J. Nat. 2008; 3: PubMed Scopus Google Scholar). revealed that the of a protein is highly its structure and that the of and their complexes can be from K. I. A.M. Science. 2005; PubMed Scopus Google Scholar). In the we and to the structural of SEN and mutant an a of and structural of the for protein on it was except for SENK344E, all SEN as The SENK344E mutant was to a of and the in as by is with a of the of this mutant and could account for the which was greater than SEN and each of the other These structural in the SENK344E mutant also in between the lysine-binding kringle domains of plasminogen and for the plasminogen binding capacity for this SEN The ability of SEN to bind plasminogen has been demonstrated for GAS and other bacterial species (27Pancholi V. Fischetti V.A. J. Biol. Chem. 1998; 273: 14503-14515Abstract Full Text Full Text PDF PubMed Scopus (450) Google Scholar, S. Wild D. Diekmann O. Frank R. Bracht D. Chhatwal G.S. Hammerschmidt S. Mol. Microbiol. 2003; 49: 411-423Crossref PubMed Scopus (191) Google Scholar). Although the plasminogen binding ability of GAS SEN has been to the C-terminal lysine residues + we that internal lysine residues + also to plasminogen as for the closely related S. pneumoniae α-enolase A. Song Y.P. Parikh S. Fischetti V.A. Pancholi V. Infect. Immun. 2004; 72: 94-105Crossref PubMed Scopus (96) Google Scholar, S. Wild D. Diekmann O. Frank R. Bracht D. Chhatwal G.S. Hammerschmidt S. Mol. Microbiol. 2003; 49: 411-423Crossref PubMed Scopus (191) Google Scholar). the of octameric SEN in this the C-terminal lysine residues + are in to the internal lysine residues + The plasminogen-binding lysine of the between the binding sites in the kringle domains of plasminogen J. Thromb. Haemost. 2004; PubMed Scopus Google Scholar, R.K. A. J. Mol. Biol. PubMed Scopus Google Scholar). These that these two binding sites play a and concerted role in plasminogen binding. a for protein for the 2-phosphoglycerate for enolase enzymatic and of and for of with
Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.
Comment cette classification a été obtenuedéplier
Prédiction distillée sur la base complète
Imitation des enseignantsNi prévalence calibrée, ni vérité terrain. Validation humaine à venir. Apprise à partir de 10 348 étiquettes directes de Codex et de 10 348 étiquettes directes de Gemma. Le mode candidate est l'union des têtes enseignantes seuillées; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont ni des étiquettes humaines ni des étiquettes directes de modèles de pointe.
Scores Codex et Gemma par catégorie
| Catégorie | Codex | Gemma |
|---|---|---|
| Métarecherche | 0,000 | 0,000 |
| Méta-épidémiologie (sens strict) | 0,000 | 0,000 |
| Méta-épidémiologie (sens large) | 0,000 | 0,000 |
| Bibliométrie | 0,000 | 0,000 |
| Études des sciences et des technologies | 0,000 | 0,000 |
| Communication savante | 0,000 | 0,000 |
| Science ouverte | 0,000 | 0,000 |
| Intégrité de la recherche | 0,000 | 0,000 |
| Charge utile insuffisante (le modèle a refusé de juger) | 0,000 | 0,000 |
Scores machine (provisoires)
Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.
Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.
score_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découleClassification
machine, non validéePrédiction automatique; un appel candidat d’une seule tête enseignante, pas un consensus.
Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».