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Enregistrement W2113348899 · doi:10.1074/jbc.m302371200

The Molecular Basis for the pH-activation Mechanism in the Channel-forming Bacterial Colicin E1

2003· article· en· W2113348899 sur OpenAlexaff
Abdiwahab A. Musse, A. Rod Merrill

Notice bibliographique

RevueJournal of Biological Chemistry · 2003
Typearticle
Langueen
DomaineBiochemistry, Genetics and Molecular Biology
ThématiqueBacterial Genetics and Biotechnology
Établissements canadiensUniversity of Guelph
Organismes subventionnairesnon disponible
Mots-clésColicinChemistryCoiled coilMutantBiophysicsMembraneBilayerBiochemistryCrystallographyStereochemistryEscherichia coliBiology

Résumé

récupéré en direct d'OpenAlex

The in vitro activity of the channel-forming bacteriocins such as colicin E1 in model membranes requires the specific activation of the protein by an acidic environment in the presence of a membrane potential. Acid activation of the C-terminal domain results in the formation of an insertion-competent intermediate an of activation the of the of in the colicin E1 domain in membrane activation the of a The of by of the of results in a in the the of the the channel-forming in a of The in vitro activity of the channel-forming bacteriocins such as colicin E1 in model membranes requires the specific activation of the protein by an acidic environment in the presence of a membrane potential. Acid activation of the C-terminal domain results in the formation of an insertion-competent intermediate an of activation the of the of in the colicin E1 domain in membrane activation the of a The of by of the of results in a in the the of the the channel-forming in a of The a of by The of in a of the formation of in the of protein of the colicin activity protein membrane membrane protein membrane of E1 a of the channel-forming of by the the of the channel-forming the domain the of the domain the the of colicin E1 the membrane the the the domain a an insertion-competent the membrane of the an The the of in the of the of the of the an the membrane by the colicin E1 activity in the in the of The colicin E1 an by colicin E1 the of an acidic environment activation of the in The of an acidic environment in an activity in in colicin E1 an of protein in an the of of the the of a membrane of the of colicin E1 activation by in a the domain of of the the The the of an environment as a of the domain the the the colicin E1 domain a of the of a the of of the protein The of of the a of the the of the the the of of the colicin E1 the of the the a the of the activation of the domain by domain membrane membrane the of E1 E1 as protein the as of activity of colicin E1 a as of colicin E1 protein a of activity as the of the of The of the the as a of the of protein of in by a in as in a by in an by a as The the the as the The the as by of colicin E1 membrane the of by as a The the as The a in the a in the the the of the as the of by the in the of the by the of the as The protein in of as by in the The protein of The The the The of by the of the The the of the protein as the the of the the of the an of the in the a the as a the of the of formation by the protein in in the presence of a The in the a a an as of the the The the the the of of the of the the as in a of a of the the protein the The of the as the of The of the protein the of the protein the of of an a a a the as the the of the domain in colicin the of the a by the of of the domain the the of channel-forming by activity as the protein as a a of as the of the the domain by as in of in a the in the membrane activity of the of the the of the protein the of the membrane an an a the the of The of the the specific colicin E1 a the the of colicin E1 the membrane in the of the of the colicin E1 of the in of in the the of of the membrane a of the protein the of of the in the colicin E1 the of the an of in the by The C-terminal domain of colicin E1 a membrane a the the of the an in The in the of acidic the the of colicin The the the in of the membrane of colicin E1 the as by The in the protein the The the of of of of protein of a in membrane activity The the in the presence of the in the presence of The formation of a in the the the in the of the the of the in of the colicin E1 of a in of the in the in in a of the a as the protein the of the in the protein of of the protein a of as the of the as the as the of a the of the the of of of the of as as the protein in in the protein by the of in the in of the in in of in protein the of a of of the of protein in of the in of the in the of the of the the membrane a in the of channel-forming The the of the the in The membrane a the The of the in by in the membrane the The in as of the membrane the the the membrane the the membrane the the of the of the the of the by as in the the the in a in a in the the of the the a membrane the of the the protein the in vitro of colicin E1 protein the membrane as the of the by of the the of the membrane the protein The presence of the membrane of the the protein of the of as a of of the The of as a of of the of the by the of the protein the membrane The a of the the the the in the of protein the of a of the in a the of by a of a of in vitro activity of colicin E1 a of the of the in The activity as the protein as by an in the The protein a The of the the The of a the a activation The in The in the a in activity the the The a of the of the in the the the the protein activation of the protein the by the of The in the the the the protein the of protein activity the protein the of the the an in the of the domain a the of the in the the the domain a of the in formation the membrane the activity the membrane the an of the domain of the of by of colicin of as the of the the of the of as the of the the of the a of the The of as the of the The the of the The a of the The in a of the the colicin E1 a the the protein the as the of the the of The the of in the of the the of the The of the the the in of the the the of the the the membrane formation of colicin the the the of colicin E1 by protein of of the the of acidic the of the the of the of the of the of the by as the in an by acidic in a as in the of colicin of Acid of of in a of the of the acidic the an acidic the of the the the of the the of of the the by the of a the of the the of the the the of the The presence of the of the of the a the activity the the of the of a of colicin the the the the of a in the of in a protein such as specific the of the a the of the the by of the of the the of the The of the a in the the the membrane activity the in the the of the the of colicin E1 the of the of the the the of the a of the of channel-forming The in the channel-forming The of acidic in channel-forming a the the domain of the protein of the the of of the colicin The of colicin a the of the the of the the a the of the the of a of the channel-forming in The as a the the channel-forming a The in the acidic an of in colicin colicin the as colicin as of of colicin of colicin in an in the the of the colicin the the of colicin of colicin The of an acidic the of colicin the of colicin as the of the of The in the the of the colicin a the protein the colicin of the in channel-forming The of the of colicin in the of the in the The the colicin E1 of the the the the colicin E1 the a of specific the the of the colicin the of the the of the the in the results of an of colicin an in of by the of of the the of colicin E1 of the a of the formation of such as as as specific of the in vitro acidic activation of the the of such an in the activation in the in of the the of of acidic the in vitro the formation of the membrane of colicin a environment the of membranes such as the the of colicin in vitro by environment the protein the of the membrane a of the of the protein the the by in of the protein a the in a intermediate of the of channel-forming the the of the the of the protein the of the membrane in the by of the membrane by the the C-terminal domain the in the membrane the of a of a a in of activation of the the the activation of the channel-forming of the the the of acidic in vitro activity of a of the environment by the as the protein the membrane of the of the acidic of the the of the membrane a the membrane as as an the model the of colicin E1 the of the the of colicin E1 the The of the protein the the the domain by the domain in the membrane as a the the of the the of the protein the the a of colicin formation the membrane of the the the the of the of protein as of of by the of by the of an of the protein such a the of the activation of in the of a of by the of acidic the of an of the acidic membranes the of specific as activation of the of the in the formation of the the a in an of the of of of the of of The a of by The of in a of the formation of in the of protein of the colicin activity protein membrane membrane protein membrane of E1 a of the channel-forming of by the the of the channel-forming the domain the of the domain the the of colicin E1 the membrane the the the domain a an insertion-competent the membrane of the an The the of in the of the of the of the an the membrane by the colicin E1 activity in the in the of The colicin E1 an by colicin E1 the of an acidic environment activation of the in The of an acidic environment in an activity in in colicin E1 an of protein in an the of of the the of a membrane of the of colicin E1 activation by in a the domain of of the the The the of an environment as a of the domain the the the colicin E1 domain a of the of a the of of the protein The of of the a of the the of the the the of of the colicin E1 the of the the a the of the activation of the domain by domain membrane membrane the of E1 E1 as protein the as of activity of colicin E1 a as of colicin E1 protein a of activity as the of the of The of the the as a of the of protein of in by a in as in a by in an by a as The the the as the The the as by of colicin E1 membrane the of by as a The the as The a in the a in the the the of the as the of by the in the of the by the of the as The protein in of as by in the The protein of The The the The of by the of the The the of the protein as the the of the the of the an of the in the a the as a the of the of formation by the protein in in the presence of a The in the a a an as of the the The the the the of of the of the the as in a of a of the the protein the The of the as the of The of the protein the of the protein the of of E1 E1 as protein the as of activity of colicin E1 a as of colicin E1 protein a of activity as the of the of The of the the as a of the of protein of in by a in as in a by in an by a as The the the as the The the as by of colicin E1 membrane the of by as a The the as The a in the a in the the the of the as the of by the in the of the by the of the as The protein in of as by in the The protein of The The the The of by the of the The the of the protein as the the of the the of the an of the in the a the as a the of the of formation by the protein in in the presence of a The in the a a an as of the the The the the the The of of the of the the as in a of a of the the protein the The of the as the of The of the protein the of the protein the of of an a a a the as the the of the domain in colicin the of the a by the of of the domain the the of channel-forming by activity as the protein as a a of as the of the the domain by as in of in a the in the membrane activity of the of the the of the protein the of the membrane an an a the the of The of the the specific colicin E1 a the the of colicin E1 the membrane in the of the of the colicin E1 of the in of in the the of of the membrane a of the protein the of of the in the colicin E1 the of the an of in the by The C-terminal domain of colicin E1 a membrane a the the of the an in The in the of acidic the the of colicin The the the in of protein of a in membrane activity The the in the presence of the in the presence of The formation of a in the the the in the of the the of the in of the colicin E1 of a in of the in the in in a of the a as the protein the of the in the protein of of the protein a of as the of the as the as the of a the of the the of of of the of as as the protein in in the protein by the of in the in of the in in of in protein the of a of of the of protein in of the in of the in the of the of the the membrane a in the of channel-forming The the of the the in The membrane a the The of the in by in the membrane the The in as of the membrane the the the membrane the the membrane the the of the of the the of the by as in the the the in a in a in the the of the the a membrane the of the the protein the in vitro of colicin E1 protein the membrane as the of the by of the the of the membrane the protein The presence of the membrane of the the protein of the of as a of of the The of as a of of the of the by the of the protein the membrane The a of the the the the in the of protein the of a of the in a the of by a of a of in vitro activity of colicin E1 a of the of the in The activity as the protein as by an in the The protein a The of the the The of a the a activation The in The in the a in activity the the The a of the of the in the the the the protein activation of the protein the by the of The in the the the the protein the of protein activity the protein the of the the an in the of the domain a the of the in the the the domain a of the in formation the membrane the activity the membrane the an of the domain of the of by of colicin of as the of the the of the of as the of the the of the a of the The of as the of the The the of the The a of the The in a of the the colicin E1 a the the protein the as the of the the of The the of in the of the the of the The of the the the in of the of an a a a the as the the of the domain in colicin the of the a by the of of the domain the the of channel-forming by activity as the protein as a a of as the of the the domain by as in of in a the in the membrane activity The of the of the the of the protein the of the membrane an an a the the of The of the the specific colicin E1 a the the of colicin E1 the membrane in the of the of the colicin E1 of the in of in the the of of the membrane a of the protein the The of of the in the colicin E1 the of the an of in the by The C-terminal domain of colicin E1 a membrane a the the of the an in The in the of acidic the the of colicin The the the in of protein of a in membrane activity The the in the presence of the in the presence of The formation of a in the the the in the of the the of the in of the colicin E1 of a in of the in the in in a of the a as the protein the of the in the protein of of the protein a of as the of the as the as the of a the the in in of in protein the of a of of the of protein in of the in of the in the of the of the the membrane a in the of channel-forming The the of the the in The membrane a the The of the in by in the membrane the The in as of the membrane the the the membrane the the membrane the the of the of the the of the by as in the the the in a in a in the the of the the a membrane the of the the protein the The of the by the of the protein the membrane The a of the the the the in the of protein the of a of the in a the of by a of a of in vitro activity of colicin E1 a of the of the in The activity as the protein as by an in the The protein a The of the the The of a the a activation The in The in the a in activity the the The a of the of the in the the the the protein activation of the protein the by the of The in the the the the protein the of protein activity the protein the of the the an in the of the domain a the of the in the the the domain a of the in formation the membrane the activity the membrane the an of the domain of the the colicin E1 a the the protein the as the of the the of The the of in the of the the of the The of the the the in of the the the of the the the membrane formation of colicin the the the of colicin E1 by protein of of the the of acidic the of the the of the of the of the of the by as the in an by acidic in a as in the of colicin of Acid of of in a of the of the acidic the an acidic the of the the the of the the of of the the by the of a the of the the of the the the of the The presence of the of the of the a the activity the the of the of a of colicin the the the the of a in the of in a protein such as specific the of the a the of the the by of the of the the of the The of the a in the the the membrane activity the in the the of the the of colicin E1 the of the of the the the of the a of the of channel-forming The in the channel-forming The of acidic in channel-forming a the the domain of the protein of the the of of the colicin The of colicin a the of the the of the the a the of the the of a of the channel-forming in The as a the the channel-forming a The in the acidic an of in colicin colicin the as colicin as of of colicin of colicin in an in the the of the colicin the the of colicin of colicin The of an acidic the of colicin the of colicin as the of the of The in the the of the colicin a the protein the colicin the colicin E1 the a of specific the the of the colicin the of the the of the the in the results of an of colicin an in of by the of of the the of colicin E1 of the a of the formation of such as as as specific of the in vitro acidic activation of the the of such an in the activation in the in of the the of of acidic the in vitro the formation of the membrane of colicin a environment the of membranes such as the the of colicin in vitro by environment the protein the of the membrane a of the of the protein the the by in of the protein a the in a intermediate of the of channel-forming the the of the the of the protein the of the membrane in the by of the membrane by the the C-terminal domain the in the membrane the of a of a a in of activation of the the the activation of the channel-forming of the the the of acidic in vitro activity of a of the environment by the as the protein the membrane of the of the acidic of the the of the membrane a the membrane as as an the model the of colicin E1 the of the the of colicin E1 the The of the protein the the the domain by the domain in the membrane as a the the of the the of the protein the the a of colicin formation the membrane of the the the the of the of protein as of of by the of by the of an of the protein such a the of the activation of in the of a of by the of acidic the of an of the acidic membranes the of specific as activation of the of the in the formation of the the a in an of the of of of the of of the the of the the the membrane formation of colicin the the the of colicin E1 by protein of of the the of acidic the of the the of the of the of the of the by as the in an by acidic in a as in the of colicin of Acid of of in a of the of the acidic the an acidic the of the the the of the the of of the the by the of a the of the the of the the the of the The presence of the of the of the a the activity the the of the of a of colicin the the the the of a in the of in a protein such as specific the of the a the of the the by of the of the the of the The of the a in the the the membrane activity the in the the of the the of colicin E1 the of the of the the the of the The a of the of channel-forming The in the channel-forming The of acidic in channel-forming a the the domain of the protein of the the of of the colicin The of colicin a the of the the of the the a the of the the of a of the channel-forming in The as a the the channel-forming a The in the acidic an of in colicin colicin the as colicin as of of colicin of colicin in an in the the of the colicin the the of colicin of colicin The of an acidic the of colicin the of colicin as the of the of The in the the of the colicin a the protein the colicin the colicin E1 the a of specific the the of the colicin the of the the of the the in the results of an of colicin an in of by the of of the the of colicin E1 of the a of the The formation of such as as as specific of the in vitro acidic activation of the the of such an in the activation in the in of the the of of acidic the in vitro the formation of the membrane of colicin a environment the of membranes such as the the of colicin in vitro by environment the protein the of the membrane a of the of the protein the the by in of the protein a the in a intermediate of the of channel-forming the the of the the of the protein the of the membrane in the by of the membrane by the the C-terminal domain the in the membrane the of a of a a in of activation of the the the activation of the channel-forming of the the the of acidic in vitro activity of a of the environment by the as the protein the membrane of the of the acidic of the the of the membrane a the membrane as as an the the the the of the of protein as of of by the of by the of an of the protein such a the of the activation of in the of a of by the of acidic the of an of the acidic membranes the of specific as activation of the of the in the formation of the the a in an of the of of of the of of the of of

Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.

Comment cette classification a été obtenuedéplier

Prédiction distillée sur la base complète

Imitation des enseignants

Ni prévalence calibrée, ni vérité terrain. Validation humaine à venir. Apprise à partir de 10 348 étiquettes directes de Codex et de 10 348 étiquettes directes de Gemma. Le mode candidate est l'union des têtes enseignantes seuillées; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont ni des étiquettes humaines ni des étiquettes directes de modèles de pointe.

score de la tête « metaresearch » (Codex)0,001
score de la tête « metaresearch » (Gemma)0,001
Version: codex-gemma-dda1882f352aStatut de validation: machine_predicted_unvalidated
Catégories candidatesaucune
Catégories consensuellesaucune
DomaineSignal candidat: aucune · Signal consensuel: aucune
Devis d'étudeSignal candidat: Expérimental (laboratoire) · Signal consensuel: Expérimental (laboratoire)
GenreSignal candidat: Empirique · Signal consensuel: Empirique
Score de désaccord entre enseignants0,056
Score d'incertitude au seuil0,275

Scores Codex et Gemma par catégorie

CatégorieCodexGemma
Métarecherche0,0010,001
Méta-épidémiologie (sens strict)0,0000,000
Méta-épidémiologie (sens large)0,0000,000
Bibliométrie0,0000,000
Études des sciences et des technologies0,0000,000
Communication savante0,0000,000
Science ouverte0,0010,000
Intégrité de la recherche0,0000,000
Charge utile insuffisante (le modèle a refusé de juger)0,0000,000

Scores machine (provisoires)

Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.

Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.

Tête enseignante Opus0,017
Tête enseignante GPT0,242
Écart entre enseignants0,225 · la distance entre les deux têtes enseignantes sur ce seul travail
Statut de validationscore_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découle

Classification

machine, non validée

Prédiction automatique; un appel candidat d’une seule tête enseignante, pas un consensus.

Les modèles n’ont appliqué aucune catégorie : rien dans la taxonomie ne correspondait à ce travail.
Devis d'étudeExpérimental (laboratoire)
Domainenon disponible
GenreEmpirique

Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».

En bref

Citations27
Publié2003
Routes d'admission1
Résumé présentoui

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