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Enregistrement W2117797028 · doi:10.1093/ije/dyu064

Commentary: Genotype does not determine phenotype

2014· letter· en· W2117797028 sur OpenAlexaff
Jan Sapp

Notice bibliographique

RevueInternational Journal of Epidemiology · 2014
Typeletter
Langueen
DomaineBiochemistry, Genetics and Molecular Biology
ThématiqueBRCA gene mutations in cancer
Établissements canadiensYork University
Organismes subventionnairesnon disponible
Mots-clésHeredityInheritance (genetic algorithm)Meaning (existential)LexiconGeneticsContext (archaeology)Character (mathematics)GenealogyBiologyPhilosophyEpistemologyLinguisticsHistoryGene

Résumé

récupéré en direct d'OpenAlex

Wilhelm Johannsen’s ‘The Genotype Conception of Heredity’1 introduced three fundamental terms into the lexicon of biology: ‘genotype’, ‘phenotype’ and ‘gene’; all seminal to the new emerging discipline of genetics. His paper was published 11 years after Hugo de Vries and Carl Correns ‘rediscovered’ what came to be called ‘Mendel’s laws of inheritance’. William Bateson introduced the term ‘genetics’ in 1905; he also added ‘zygote’ ‘homozygote’, ‘heterozygote’ and ‘allelomorph’ to the lexicon of genetics. Johannsen proposed his new terms in the context of heated debates over the modes of evolutionary change, the meaning of heredity, and hereditary factors. Their precise definitions have changed over the past 100 years, but the arguments he made are as germane now as they were then. Johannsen begins his discussion of the meaning of ‘heredity’ and ‘inheritance’ in biology and society. Those terms, he notes, are ‘Borrowed from everyday language in which the meaning of these words is the “transmission” of money or things, rights or duties from one person to another: the “heirs” or “inheritors”’. The word ‘inheritance’ was confusing because in biology personal characteristics are not inherited. One had to distinguish the adult character from something else which is inherited and which somehow affects that character. Others had noted the same problem: the biological conception of heredity differed from the societal conception. Embryologist EG Conklin commented in 1908, ‘The comparison of heredity to the transmission of property from parent to children has produced confusion in the scientific as well as the popular mind’.2 Similarly, Thomas Hunt Morgan, who had left experimental embryology and founded the Drosophila school of genetics, wrote in 1910: ‘When we speak of the transmission of characters from parent to offspring, we are speaking metaphorically; for we now realize that it is not characters that are transmitted to the child from the body of the parent, but that the parent carries over the material common to both parent and offspring’.3 Johannsen’s articulation of the distinction between the social and the new biological meaning was derived from Mendelism and from his own famous selection experiments.1 The idea of an underlying ‘type’ for each species was the core idea behind his selection experiments with beans in 1903 (he had first introduced the term ‘genotype’ in a monograph written in German in 1909).4 The ‘genotype,’ which he defined as the sum total of all the “genes” in a gamete or in a zygote, could only be discerned by experimentation.1 The ‘phenotype’, on the other hand, could be readily seen. ‘All “types” of organisms,’ Johannsen wrote, ‘Distinguished by direct inspection or only by finer methods of measuring or description, may be characterized as “phenotypes”’.1 He thus redefined ‘heredity’ ‘as the presence of identical genes in ancestors and descendants’.1 Naturalists and statisticians, whose views of heredity were based on direct inspection of organisms, were wholly mistaken because they assumed that an adult individual was a good representation of its genotype. Geneticists showed that an individual might have hidden recessive traits and therefore adult traits were not at all a fair representative of the genotype. Moreover, by observing phenotypes, one also could not distinguish between what was inherited and what was due to the environment. Certainly, medical and biological statisticians have in modern times been able to make elaborate statements of great interest for insurance purposes, for the ‘eugenics-movement’ and so on. But no profound insight into the biological problem of heredity can be gained on this basis.1 Conceptions of evolutionary change based on ‘Lamarckian’ principles of environmentally directed adaptive hereditary change suffered from the erroneous assumption that adult qualities of the individual are transmitted.1 External conditions may mould an individual’s phenotype in an adaptive manner, but there was no evidence that they could induce adaptive changes in the genotype. Genotypes affected the personal qualities of the parents, not vice versa. Biometricians’ views were equally faulty. Galton noted that in populations there was a statistical regression toward the mean in such traits as tallness of men. He attributed that to an ancestral heredity, which would he halved in every generation. It was a common-sense perspective, and one whose underlying mechanism was based on blending inheritance. Mendelian genetics showed, however, that although phenotypes blended, genotypes did not. That homozygous recessives could result from heterozygous parents was completely inexplicable by Galton’s law, and indeed refuted it. Thus Johannsen dismissed the ‘laws of ancestral influence’ as mere superstition. Ancestral influence! As to heredity, it is a mystical expression for a fiction. The ancestral influences are the ‘ghosts’ in genetics, but generally the belief in ghosts is still powerful.1 Johannsen’s introduction of the term ‘gene’ also occurred in the midst of controversy over determinist views of hereditary factors. Postulations of biological determinants, endowed with the properties of reproduction, assimilation and growth, had been pervasive in the 19th century: the ‘gemmules’ of Darwin, ‘physiological units’ of Herbert Spencer, ‘pangenes’ of de Vries and ‘bioblasts’ of Richard Altmann had been widely considered. The most elaborate 19th century theory of heredity and development was that of August Weismann who postulated the existence of a hierarchy of determinants, organized in chromosomes, which would segregate out of the cell nucleus in the course of development and determine cell types. Weismann’s theory was refuted in the 1890s when experimental embryologists showed that the fate of a cell during ontogeny was regulated at least in part through its relations with others. Johannsen’s aim in introducing the term ‘gene’ was to dissociate Mendelian genetics from all such discredited, speculative conceptions of self-reproducing vital entities. ‘Of all the Weismannian army of notions and categories’, he said, ‘Mendelism may use nothing’.1 The nature of the gene was of course not known, but the idea that the Mendelian factors were ‘discrete particles of the chromosomes’ was not a corollary of his genotype conception.1 Johannsen’s ‘gene’ did not have the power to reproduce itself, to grow and to assimilate; it did not possess an independent life of its own. ‘The gene’, he said, ‘Was nothing but a very applicable little word’.1 As he later put it, ‘The Mendelian units as such, taken per se are powerless’.5 Indeed, it behoves us to take note that Johannsen’s genotype conception of heredity is a version distinct from two erroneous views, which are heard too often to this day, that ‘genotype determines phenotype’ and that the ‘gene’/DNA is self replicating. Conflict of interest: None declared.

Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.

Comment cette classification a été obtenuedéplier

Prédiction machine sur la base complète

Imitation des enseignants

Ni prévalence calibrée, ni vérité terrain. Validation humaine à venir. Le volet Gemma est une étiquette directe du modèle pour chaque travail de la base, lue sur la notice réduite au titre. Le volet Codex est un classifieur appris des 10 348 étiquettes directes de Codex et calibré sur les taux pondérés de l'échantillon; les champs sans appui suffisant ne portent aucun appel Codex. Le mode candidate est l'union des deux volets; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont pas des étiquettes humaines.

score de la tête « metaresearch » (Codex)0,006
score de la tête « metaresearch » (Gemma)0,034
Version: metacan-v3-hybrid-931329e0061cStatut de validation: machine_predicted_unvalidated
Catégories candidatesaucune
Catégories consensuellesaucune
DomaineSignal candidat: aucune · Signal consensuel: aucune
Devis d'étudeSignal candidat: Sans objet · Signal consensuel: Sans objet
GenreSignal candidat: Commentaire · Signal consensuel: Commentaire
Score de désaccord entre enseignants0,063
Score d'incertitude au seuil0,055

Scores du classifieur distillé par catégorie (deux têtes)

CatégorieCodexGemma
Métarecherche0,0060,034
Méta-épidémiologie (sens strict)0,0020,001
Méta-épidémiologie (sens large)0,0020,002
Bibliométrie0,0010,001
Études des sciences et des technologies0,0050,007
Communication savante0,0030,007
Science ouverte0,0080,002
Intégrité de la recherche0,0630,085
Charge utile insuffisante (le modèle a refusé de juger)0,0130,017

Scores machine (provisoires)

Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.

Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.

Tête enseignante Opus0,036
Tête enseignante GPT0,340
Écart entre enseignants0,303 · la distance entre les deux têtes enseignantes sur ce seul travail
Statut de validationscore_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découle

Classification

machine, non validée

Prédiction automatique; un appel candidat d’une seule source (Gemma direct ou Codex distillé), pas un consensus.

Les modèles n’ont appliqué aucune catégorie : rien dans la taxonomie ne correspondait à ce travail.
Devis d'étudeSans objet
Domainenon disponible
GenreCommentaire

Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».

En bref

Citations3
Publié2014
Routes d'admission1
Résumé présentoui

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