New climate velocity algorithm is nearly equivalent to simple species distribution modeling methods
Notice bibliographique
Résumé
In a recent study, Hamann et al. (2015) proposed a new algorithm for computing climatic velocity. The advantage of the new method in comparison with the classical one (Loaire et al., 2009) was that it could effectively avoid infinite velocity and present scale-invariant property. Here, I showed that this novel method actually was a hybrid of two simple methods in species distribution modeling (SDMs). My finding could fundamentally explain why there was a close link between climate velocity and species' potential suitable range as implicitly found in previous works (Burrows et al., 2014). where VA(N) was the velocity in site A using the whole area N as the searching background. Time|future-current| was the year number by subtracting the future-time year to the current-time year. I(●) was the indicator function and returned 1 when the condition inside the parenthesis was satisfied (otherwise returned 0). dist(AB) was the geographic distance between site A and B. d(AcurrentBfuture) was the environmental distance between sites A and B at current and future time (Acurrent and Bfuture), respectively [the same for d(AfutureBcurrent)]. In Hamann et al. (2015)'s study, the climatic distance was measured as the absolute difference of current and future climatic values in site A and B. However, this environmental distance d(●) could be generalized to be any distance metrics. Such a generalization could be used to handle multiple climatic variables simultaneously without performing dimensional reduction (which would lose information). The numerator was to search the minimal distance between sites A and B across the whole area N. Equation 4 actually was SDM methods with a combination of geographic and DOMAIN profile models: both computed the environmental and/or geographic distances for a focused site to the sites occupied by the species. The mathematical formulation of both models was shown as below for detailed comparison. For a site A inside N, its distance (or the unsuitability index of the site for the species) in the past/future time to the sites inside species' current range T could be calculated as: Here, d(●) in the DOMAIN model was the Gower's distance (Gower, 1971). The corresponding suitability index of site A for the species to occupy in the past/future time was , respectively (Carpenter et al., 1993; Hijmans & Elith, 2013). By comparing simple SDM models (5) and (6) to velocity core Eqn 4, MA(T)forward and MA(T)backward could be interpreted as distance metrics measuring the unsuitability of the site A in the past and future time, respectively, for a species to occur: they compared past- and future-climatic conditions of site A, respectively, to current climatic conditions of all the sites within the currently observed range T of the species using both geographic and environmental distances. As such, both MA(T)forward and MA(T)backward were a simple hybrid of geographic and DOMAIN models in doing SDMs: For a test site A, the new velocity algorithm was to (i) use DOMAIN model to search for candidate sites in species' current range T with analogous climate under the constraint of threshold t; (ii) then use geometric model to compute the minimal geographic distance from the test site A to all candidate sites identified at the previous step. Moreover, if t → ∞, . And if species' current range was large enough (T → N), MA(T)forward/backward → MA(N)forward/backward. Therefore, if t → ∞ and N → T, MA(N)forward/backward = VA(N)forward/backward × Time → GA(T). Conclusively, climate velocity algorithm VA(N)forward/backward could be transformed to distance-based SDM models (especially the geographic model) for predicting species' suitable range in the past and future when two constraints were relaxed (t → ∞ and N → T). The author thanked David Roberts for discussions and the editors for comments. This work was supported by the China Scholarship Council (No. 201308180004).
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Comment cette classification a été obtenuedéplier
Prédiction machine sur la base complète
Imitation des enseignantsNi prévalence calibrée, ni vérité terrain. Validation humaine à venir. Le volet Gemma est une étiquette directe du modèle pour chaque travail de la base, lue sur la notice réduite au titre. Le volet Codex est un classifieur appris des 10 348 étiquettes directes de Codex et calibré sur les taux pondérés de l'échantillon; les champs sans appui suffisant ne portent aucun appel Codex. Le mode candidate est l'union des deux volets; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont pas des étiquettes humaines.
Scores du classifieur distillé par catégorie (deux têtes)
| Catégorie | Codex | Gemma |
|---|---|---|
| Métarecherche | 0,002 | 0,007 |
| Méta-épidémiologie (sens strict) | 0,001 | 0,001 |
| Méta-épidémiologie (sens large) | 0,001 | 0,002 |
| Bibliométrie | 0,002 | 0,001 |
| Études des sciences et des technologies | 0,001 | 0,001 |
| Communication savante | 0,002 | 0,004 |
| Science ouverte | 0,003 | 0,002 |
| Intégrité de la recherche | 0,002 | 0,002 |
| Charge utile insuffisante (le modèle a refusé de juger) | 0,005 | 0,002 |
Scores machine (provisoires)
Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.
Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.
score_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découleClassification
machine, non validéePrédiction automatique; un appel candidat d’une seule source (Gemma direct ou Codex distillé), pas un consensus.
Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».