Phylogeny and taxonomy of Polymastiidae (Porifera: Demospongiae)
Notice bibliographique
Résumé
This thesis focuses on the family Polymastiidae, one of the key taxa of sponges (phylum Porifera), an important component of marine benthos in the polar and temperate seas. The current taxonomy of this family is based on rather few unstable morphological characters. Molecular data were previously obtained from a relatively small number of polymastiid species and the phylogeny of the polymastiids has been never studied. The main aim of the present research was to fill the gap in our knowledge on the Polymastiidae by taxonomic revision and phylogenetic reconstructions based on novel morphological and molecular data. Applying multiple morphological characters, we have revised the polymastiid genera, which were so far distinguished exclusively by the shape of extraordinary cortical spicules (exotyles). A new genus Koltunia and three new species of Sphaerotylus have been established. We have also proposed resurrection of Suberitechinus, previously synonymized with Trachyteleia, and transferring of two species of Polymastia, one to Sphaerotylus and the other to Proteleia. Based on morphological characters of 21 species representing most of the polymastiid genera, we have recovered three possible scenarios for character evolution in the family. Non-monophyly of the Polymastiidae and its largest genus Polymastia has been revealed. The most parsimonious scenario implies three synapomorphies of the polymastiid clade: loss of oscula on the main body surface, acquisition of the oscula-bearing papillae, and acquisition of the regular choanosomal skeleton. Consistency of the skeleton architecture, being radial or reticulate, within the polymastiid clade has been demonstrated. The phylogenies based on two molecular markers, the 5’-end barcoding region of cytochrome oxidase I (COI) and a fragment of the large ribosomal subunit DNA (28S rDNA), have challenged the hypotheses on the relationships between the polymastiid species based on morphology , indicating homoplasy of most morphological characters, except for the presence of oscula-bearing papillae and the absence of oscula on the main body surface. Particularly, a secondary loss of the regular choanosomal skeleton has been suggested and inconsistency of the skeleton architecture has been revealed in the polymastiid clade. Non-monophyly of four genera, Polymastia, Radiella, Sphaerotylus and Tentorium, has been demonstrated with the molecular data. The molecular phylogenies strongly support three clades, each including the type species of the respective genera Polymastia, Sphaerotylus and Spinularia. However, no morphological synapomorphies can be defined for these clades and, accordingly, no satisfactory classification of Polymastiidae can be proposed for now. Nevertheless, based on the molecular phylogenies, we have proposed one change in the current classification, the abandonment of Radiella, with two species previously placed in this genus transferred to Spinularia and one species transferred to Polymastia. Some inconsistencies between the estimated 28S rDNA and CO1 trees were found. They may result from unequal evolutionary rates and different genealogical histories of the mitochondrial and nuclear genes studied. The other factor leading to the inconsistencies is the lower resolution of the CO1 tree in comparison with the 28S rDNA tree, indicating insufficiency of the phylogenetic signal in the standard 5'-end barcoding region for reconstruction of sponge phylogenies. Another problem revealed in our study is an intragenomic polymorphism of 28S rDNA in three closely related species of Polymastia, with some identical gene versions observed in individuals of different species. Since these species are otherwise clearly distinguished in CO1, we assume that the polymorphism in the nuclear gene may result from incomplete lineage sorting, or from a gene flow through hybridization between the species. Based on both morphological and molecular data, we have revised the polymastiid fauna of the Nordic and Siberian Seas. Twenty species, of which two are new to science and three are new for the area of the study, have been documented. We assume an Atlantic origin of all polymastiid species recorded in the Arctic, with ten species distributed in a wide area from Canada to the Siberian Seas and four species limited to the northern- east sector of this area. Furthermore, we have questioned the allegedly cosmopolitan distribution of two species. Our study emphasizes once again the advantages of the integrative approach based on multiple morphological characters and datasets of several genes for natural classification of organisms.
Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.
Comment cette classification a été obtenuedéplier
Prédiction distillée sur la base complète
Imitation des enseignantsNi prévalence calibrée, ni vérité terrain. Validation humaine à venir. Apprise à partir de 10 348 étiquettes directes de Codex et de 10 348 étiquettes directes de Gemma. Le mode candidate est l'union des têtes enseignantes seuillées; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont ni des étiquettes humaines ni des étiquettes directes de modèles de pointe.
Scores Codex et Gemma par catégorie
| Catégorie | Codex | Gemma |
|---|---|---|
| Métarecherche | 0,001 | 0,000 |
| Méta-épidémiologie (sens strict) | 0,000 | 0,000 |
| Méta-épidémiologie (sens large) | 0,001 | 0,000 |
| Bibliométrie | 0,000 | 0,000 |
| Études des sciences et des technologies | 0,000 | 0,000 |
| Communication savante | 0,000 | 0,000 |
| Science ouverte | 0,001 | 0,001 |
| Intégrité de la recherche | 0,000 | 0,000 |
| Charge utile insuffisante (le modèle a refusé de juger) | 0,001 | 0,000 |
Scores machine (provisoires)
Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.
Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.
score_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découleClassification
machine, non validéePrédiction automatique; un appel candidat d’une seule tête enseignante, pas un consensus.
Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».