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Enregistrement W2756111873 · doi:10.5197/j.2044-0588.2017.036.008

First report of <i>Turnip yellow mosaic virus</i> in Chinese cabbage and rocket in the Philippines

2017· article· en· W2756111873 sur OpenAlex
R. Reeder, Steve Edgington, N.S. Baucas, R. C. Joshi, M.A.G. Bas‐ilan, A. Skelton, A. Fowkes, V. Harju, R. Ward, Michael E. Kelly, A. Buxton Kirk, S. Forde, Adrian Fox, Sivapragasam Annamalai

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Notice bibliographique

RevueNew Disease Reports · 2017
Typearticle
Langueen
DomaineAgricultural and Biological Sciences
ThématiquePlant Virus Research Studies
Établissements canadiensnon disponible
Organismes subventionnairesnon disponible
Mots-clésBiologyBrassica rapaBrassicaBrassica oleraceaCropHorticultureRaphanusPlant virusAgronomyVirus

Résumé

récupéré en direct d'OpenAlex

In 2012, vegetable farmers in the Philippine highlands (Buguias and Benguet provinces) first observed unusual yellowing symptoms in Chinese cabbage (Brassica rapa subsp. pekinensis) planted in their fields. The symptoms were pronounced vein clearing, vein yellowing and a bright yellow mosaic. Similar symptoms were again seen in 2013 with more farmers reporting serious crop losses. The Benguet State University Plant Pest Clinic initially identified the problem as a viral disease but were unable to identify the cause further. The disease continued to affect farmers in subsequent years and in a varietal field trial conducted from October 2015 to February 2016 the incidence ranged from 10-32%. In January of 2017 during a field visit to the provinces of Buguias and Benguet, virus-like symptoms were observed on Chinese cabbage (Figs. 1-3), rocket (Eruca sativa; Fig. 4), cabbage (Brassica oleracea), pak choi (Brassica rapa subsp. chinensis) and radish (Raphanus raphanistrum subsp. sativus). In addition to the virus symptoms the plants were observed to be heavily infested with adult striped flea beetle (Phyllotreta striolata). The viral disease was widespread on Chinese cabbage infecting approximately 25% of the crop (Fig. 5). Symptomatic leaves were taken from the brassicaceous plants at 17 sampling locations. In total leaves from 48 Chinese cabbage plants were selected as well as leaves from individual plants of pak choi, rocket, radish and cabbage. The leaf samples were packaged up and sent to the Diagnostic and Advisory Service, CABI, UK for further analysis. On examination the samples were subsequently forwarded onto Fera Science Ltd for virus testing. The dried samples were bulked together for virus testing using ELISA. All samples tested negative for known viruses of Brassicaceae, such as Cucumber mosaic virus, Turnip mosaic virus and Turnip yellows virus. However, the bulked sample was positive for Turnip yellow mosaic virus (TYMV, genus Tymovirus). In order to ascertain how widespread the virus was, representative leaf samples from each host at each location were tested for TYMV individually using ELISA. All of the leaf samples of Chinese cabbage tested positive as did one sample of rocket. However, there were no positives for TYMV for leaf samples of cabbage, pak choi or radish. To confirm the ELISA results several of the samples were tested by RT-PCR using a TYMV primer set (Lee & Rho, 2015). Amplicons of the expected size were detected (491 bp) in all the Chinese cabbage samples tested and the rocket sample. The PCR products for one of the Chinese cabbage samples and the rocket sample were sent for sequencing. Consensus sequence data was obtained using Mega 4.1 software. Nucleotide sequences were compared by searching the BLASTn database, confirming TYMV in both samples (95% nucleotide sequence identity to GenBank Accession No. X07441). The sequences were added to GenBank (MF576298, Chinese cabbage; and MF576299, rocket). TYMV is confined almost entirely to the Brassicaceae family, and has been reported in the former Czechoslovakia, Italy, Spain, UK, Japan, Canada, Australia and New Zealand. However, to the best of the authors' knowledge this is the first report of this virus in the Philippines. The virus is seed transmitted with relatively low rates of transmission (2.5-2.9%) (Alfaro-Fernández et al., 1) and this may have been how it arrived in the Philippines. Transmission in the field is by flea-beetles, species of Phyllotreta and Psylliodes, and the mustard beetle (Phaedon cochleariae) including its larvae. Future studies to investigate the transmission and management options for the virus in the Philippines are being planned.

Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.

Prédiction distillée sur la base complète

Imitation des enseignants

Ni prévalence calibrée, ni vérité terrain. Validation humaine à venir. Apprise à partir de 10 348 étiquettes directes de Codex et de 10 348 étiquettes directes de Gemma. Le mode candidate est l'union des têtes enseignantes seuillées; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont ni des étiquettes humaines ni des étiquettes directes de modèles de pointe.

score de la tête « metaresearch » (Codex)0,001
score de la tête « metaresearch » (Gemma)0,001
Version: codex-gemma-dda1882f352aStatut de validation: machine_predicted_unvalidated
Catégories candidatesaucune
Catégories consensuellesaucune
DomaineSignal candidat: aucune · Signal consensuel: aucune
Devis d'étudeSignal candidat: Observationnel · Signal consensuel: Observationnel
GenreSignal candidat: Empirique · Signal consensuel: Empirique
Score de désaccord entre enseignants0,027
Score d'incertitude au seuil1,000

Scores Codex et Gemma par catégorie

CatégorieCodexGemma
Métarecherche0,0010,001
Méta-épidémiologie (sens strict)0,0000,000
Méta-épidémiologie (sens large)0,0000,000
Bibliométrie0,0000,000
Études des sciences et des technologies0,0000,000
Communication savante0,0000,000
Science ouverte0,0000,000
Intégrité de la recherche0,0000,000
Charge utile insuffisante (le modèle a refusé de juger)0,0000,000

Scores machine (provisoires)

Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.

Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.

Tête enseignante Opus0,025
Tête enseignante GPT0,275
Écart entre enseignants0,250 · la distance entre les deux têtes enseignantes sur ce seul travail
Statut de validationscore_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découle