Phylogeographic analysis of an Arctic rabies host species, the red (Vulpes vulpes) and arctic (Vulpes lagopus) fox, in the Eastern Subarctic region of Canada
Notice bibliographique
Résumé
Rabies is a fatal disease that raises public health concerns in the Canadian Eastern Subarctic region, however, the origins and the spread of epizootics of this lethal zoonotic disease are little understood. Coloured or red (Vulpes vulpes) and arctic (Vulpes lagopus) foxes across northern Canada are considered to be the principal maintenance or reservoir hosts of rabies virus. Therefore, I studied the phylogeography of one host, the red fox, to better understand the movement of the host and compare it with virus variant distribution across the landscape. Many studies confirm the impacts of environmental changes, particularly climate change, on the migratory behaviors of both fox and rabies virus variants. Also, different geographical areas have different population densities of red and arctic foxes. This study focused on red foxes sampled from the areas of Montreal, Abitibi-Témiscamingue, James Bay, Kuujjuarapik, Umiujaq, Inukjuak, and Kuujjuaq in Quebec, and Labrador City, North West River, Port Hope Simpson and Cartwright in Labrador. A series of 15-loci microsatellite profiles were used to genetically characterize 396 foxes and determine their phylogeographic relationships with respect to the landscape. Microsatellite markers were assessed using Micro-Checker to test for null alleles, stuttering or large allele dropout. Linkage disequilibrium among all pairs of loci was evaluated with GenePop. Genetic diversity and F-statistics was measured by using Arlequin in both loci and populations. Population structure was investigated with pairwise FST measures, Analysis of Molecular Variance, and individual clustering methods such as STRUCTURE and Geneland. FIT was significant at four loci and FST was significant at all loci indicating that the loci selected are suitable for analysis. FIS was not significant in any populations. The conclusions from the phylogeographic analysis were that there are four genetic groups of red foxes in this region of Canada, consisting of one in the Montreal area, one in James Bay, and two segregating in northern Quebec and Labrador. The Abitibi region was a mixture of the Montreal and the James Bay clusters. When a northwestern locality, Churchill NB, was included and 9-locus genotypes used, there were three distinct clusters, with Churchill dominated by one, Montreal by another and a third northeastern group prevalent in northern Quebec and Labrador. James Bay was a mixture of the Churchill cluster and the northeastern one, Abitibi- Témiscamingue was a mixture of the Montreal and the Churchill clusters, and the Churchill cluster also spread into northern Quebec and Labrador. These results suggest routes by which rabies virus could be spread via red fox movement patterns, such as along the coast, or from north to south, but also suggests a possible barrier to movement further south than Montreal. This study is important because the rabies virus is still a relevant public health concern for Canadians and, as such, research contributing to its effective eradication and control is of great importance. The results from this study will be used to inform theoretical models to help predict future rabies virus transmission and spread.
Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.
Comment cette classification a été obtenuedéplier
Prédiction machine sur la base complète
Imitation des enseignantsNi prévalence calibrée, ni vérité terrain. Validation humaine à venir. Le volet Gemma est une étiquette directe du modèle pour chaque travail de la base, lue sur la notice réduite au titre. Le volet Codex est un classifieur appris des 10 348 étiquettes directes de Codex et calibré sur les taux pondérés de l'échantillon; les champs sans appui suffisant ne portent aucun appel Codex. Le mode candidate est l'union des deux volets; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont pas des étiquettes humaines.
Scores du classifieur distillé par catégorie (deux têtes)
| Catégorie | Codex | Gemma |
|---|---|---|
| Métarecherche | 0,000 | 0,001 |
| Méta-épidémiologie (sens strict) | 0,000 | 0,000 |
| Méta-épidémiologie (sens large) | 0,000 | 0,000 |
| Bibliométrie | 0,002 | 0,002 |
| Études des sciences et des technologies | 0,001 | 0,000 |
| Communication savante | 0,001 | 0,000 |
| Science ouverte | 0,000 | 0,000 |
| Intégrité de la recherche | 0,000 | 0,000 |
| Charge utile insuffisante (le modèle a refusé de juger) | 0,001 | 0,000 |
Scores machine (provisoires)
Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.
Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.
score_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découleClassification
machine, non validéePrédiction automatique; un appel candidat d’une seule source (Gemma direct ou Codex distillé), pas un consensus.
Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».