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Enregistrement W3152510575 · doi:10.1093/biosci/biab037

The virus evolves: four public health priorities for reducing the evolutionary potential of SARS-CoV-2

2021· article· en· W3152510575 sur OpenAlex

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Notice bibliographique

RevueBioScience · 2021
Typearticle
Langueen
DomaineMathematics
ThématiqueCOVID-19 epidemiological studies
Établissements canadiensnon disponible
Organismes subventionnairesnon disponible
Mots-clésCoronavirus disease 2019 (COVID-19)Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)Sars virus2019-20 coronavirus outbreakPublic healthVirologyVirusPandemicBiologyMedicineInfectious disease (medical specialty)

Résumé

récupéré en direct d'OpenAlex

As scientists who study evolution, we are concerned about the threat posed to public health by evolving SARS-CoV-2 variants. We celebrate the start of vaccination campaigns, enabled by remarkable scientific achievements, but these advances are now at risk of being undermined by evolution. In particular, we emphasize that—unless we keep case numbers low—novel variants will continue to emerge, increasing the chances that some will evade vaccine-induced immunity. These dangerous consequences of SARS-CoV-2 evolution are looming, but rapid viral evolution is not inevitable. Fundamental principles of evolution provide clear guidelines for slowing down the evolutionary process. With these principles in mind and echoing the calls made by others (see the supplementary material for complete references and signatories), we urge policymakers to prioritize the following: One of the most well established truths of evolution is that adaptive change is more likely when populations are larger. This means that a drastic reduction in infections will not only reduce illness and save lives in the face of variants that are already present, but it will guard against the conditions that favor the evolution of new variants of concern, which may be more transmissible, more virulent, or more able to escape immunity (“escape variants”). The emergence and spread of escape variants is favored by transmission of the virus to and from people who are immunized (whether they have been immunized by natural infection or by vaccines). Although such transmission chains may be infrequent, they become more likely when case numbers are high in areas where vaccinations are being rolled out. Therefore, in order to limit the emergence and spread of escape variants as vaccination campaigns proceed, policy-makers should encourage vaccinated people to continue to adhere to mitigation measures (e.g., masks, physical distance, ventilation) while case numbers remain high. Genomic surveillance (regular sequencing of a representative sample of cases) is essential for identifying the emergence of new variants. Sharing these sequence data on public repositories as quickly as possible will enable rapid responses when new variants of concern are detected. Moreover, genomic data should be paired with patient metadata so that any variants that alter the disease characteristics can be identified. Concurrent with genomic surveillance, increased genotyping of samples from cases for known variants of concern (e.g., via RT-PCR, polymerase chain reaction, which can return test results very quickly) is needed for rapid detection so that targeted control efforts can be put in place around those cases. We all live on the same planet. Leaving the epidemic uncontrolled anywhere leaves the global population vulnerable to the evolution of variants that can escape immunity. Therefore, we support the scientific consensus calling for global coordination on both vaccination campaigns and genomic surveillance. We ask leaders to seize this window of opportunity; protect the health of citizens and economies by taking swift action to guard against the threat of ongoing viral evolution. Supplemental file with a list of society signatories and full references is available at BIOSCI online. Joint Public Policy Committee: The Society for the Study of Evolution and The American Society of Naturalists Co-signing scientific societies include the Society for the Study of Evolution, the American Society of Naturalists, the European Society for Evolutionary Biology, the American Institute for Biological Sciences, the Canadian Society for Ecology and Evolution, the Society of Systematic Biologists, the Indian Society of Evolutionary Biologists, the International Society for Behavioral Ecology, the Netherlands Society for Evolutionary Biology, the Chilean Society of Evolution, the European Society for Evolution and Development, and the Konrad Lorenz Institute for Evolution and Cognition Research.

Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.

Prédiction distillée sur la base complète

Imitation des enseignants

Ni prévalence calibrée, ni vérité terrain. Validation humaine à venir. Apprise à partir de 10 348 étiquettes directes de Codex et de 10 348 étiquettes directes de Gemma. Le mode candidate est l'union des têtes enseignantes seuillées; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont ni des étiquettes humaines ni des étiquettes directes de modèles de pointe.

score de la tête « metaresearch » (Codex)0,003
score de la tête « metaresearch » (Gemma)0,017
Version: codex-gemma-dda1882f352aStatut de validation: machine_predicted_unvalidated
Catégories candidatesMétarecherche
Catégories consensuellesaucune
DomaineSignal candidat: aucune · Signal consensuel: aucune
Devis d'étudeSignal candidat: Théorique ou conceptuel · Signal consensuel: Théorique ou conceptuel
GenreSignal candidat: Empirique · Signal consensuel: Empirique
Score de désaccord entre enseignants0,498
Score d'incertitude au seuil0,991

Scores Codex et Gemma par catégorie

CatégorieCodexGemma
Métarecherche0,0030,017
Méta-épidémiologie (sens strict)0,0000,000
Méta-épidémiologie (sens large)0,0000,000
Bibliométrie0,0000,000
Études des sciences et des technologies0,0010,001
Communication savante0,0000,000
Science ouverte0,0010,000
Intégrité de la recherche0,0000,000
Charge utile insuffisante (le modèle a refusé de juger)0,0000,000

Scores machine (provisoires)

Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.

Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.

Tête enseignante Opus0,460
Tête enseignante GPT0,453
Écart entre enseignants0,007 · la distance entre les deux têtes enseignantes sur ce seul travail
Statut de validationscore_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découle