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Enregistrement W4255158602 · doi:10.1093/auk/124.4.1449

Nomenclatural errors in moa taxonomy: A reply to Worthy

2007· article· en· W4255158602 sur OpenAlexaff
Allan J. Baker

Notice bibliographique

RevueThe Auk · 2007
Typearticle
Langueen
DomaineAgricultural and Biological Sciences
ThématiquePlant and animal studies
Établissements canadiensRoyal Ontario Museum
Organismes subventionnairesnon disponible
Mots-clésZoologyTaxonomy (biology)BiologyGeography

Résumé

récupéré en direct d'OpenAlex

In reproducing the control-region gene tree from Baker et al. (2005), I was careful to state in the text of my review (Baker 2007:22) that “Bayesian analysis of these sequences recovered 14 monophyletic lineages, 9 of which are currently recognized, plus 5 new lineages that may warrant species status.” It certainly was not my intention to revise the taxonomy of the moas, but rather to draw attention to some lineages that almost certainly deserve species status on the basis of their phylogenetic depth in the tree. I erred by changing the caption of the figure to include several “n.sp.” labels, and provided Worthy (2007) with an opportunity to accuse me of doing a disservice to moa taxonomy. However, although he had no difficulty in suggesting what the correct names should be in the event of a taxonomic revision of the moas, I am not as confident as he in making these assertions. Unless the types have been identified correctly (as they obviously had not been in the past; e.g., Worthy 2005) and they have also been genotyped, there is still doubt as to what nomenclature is correct. The recent update on moa systematics that Worthy chides me for overlooking was published in the journal Tuhinga (Worthy 2005). I was unfamiliar with this journal, as most readers probably are. This does not excuse me for not locating it, because in the paper he purports to have rediscovered the types of Dinornis curtus Owen and Palapteryx geranoides Owen. Examining the features of a left tibiotarsus confusingly marked with four different catalogue numbers, Worthy determined that this is the missing lectotype of D. curtus and that it is referable to Euryapteryx curtus. Genomic DNA had been extracted from this bone and a sequence would be published later, but to my knowledge this has not been done. So we lack concrete proof that the above synonymy is correct, though it could well be. DNA sequences of what was then called E. curtus and E. geranoides were shown to be very similar (Baker 2007), thus invalidating claims by others, including Worthy, that there were two species of Euryapteryx in New Zealand. However, as Worthy (2007) pointed out, this does mean that I should have referred to this lineage as E. curtus if the above synonymy is correct. Equally, it means that Worthy (2005:40) was wrong to propose that E. curtus should be applied to the “small exclusively North Island form” and E. gravis to “a larger form found in both the North and South Islands.” Instead, this is probably an example of geographic variation in one species. Worthy really ought to practice what he preaches about nomenclatural confusion being a disservice to moa taxonomy. The other type, an almost complete cranuim labeled Palapteryx geranoides, was judged on morphological characters to be conspecific with Pachyornis mappini, even though it is very similar to the cranium of E. curtus. This judgment may well be correct as well, but again it needs to be confirmed with DNA typing. If it turned out to have a DNA sequence identical to that of E. curtus, the synonymy proposed by Worthy (2005) would be a “taxonomic disservice” and much of his criticism of my use of taxonomic names would crumble. I note that Worthy has made nomenclatural errors in labels he has attached to specimens in the Canterbury Museum in New Zealand involving Pachyornis and Euryapteryx, thereby further confusing the taxonomic identity of these lineages and leaving me wondering how one can be certain about the above synonymy. Femurs of AV8264 from Kapua and THW214 from Cheviot were labelled E. geranoides by Worthy, but they both have DNA sequences of P. elephantopus. Worthy rightfully corrected me about misassigning Megalapteryx species, but nevertheless his synonymy (Worthy 1988:107) of the lineages from either end of the South Island on the basis of “a north-south cline combined with temporal variation” is clearly rejected by DNA typing (irrespective of whether the type specimen of M. benhami has been sequenced). Worthy (2007:1448) argues that we “did not sample any specimens that could be referred to M. benhami based on size,” and therefore that our sequences have no bearing on its taxonomic status. This is exactly counter to the reasoning he used in synonymizing the different size forms (Worthy 1988) and is, therefore, contradictory logic. Further work is desirable before names are applied to the new lineages of Dinornis identified in Baker et al. (2005), but—as was pointed out in that paper—the distribution of the specimens we typed roughly coincides with previously recognized taxa that have been lumped together in more recent taxonomic revisions. The bottom line is that the assignment of taxa based on isolated bones recovered from sites with mixtures of species or composite specimens has led to numerous nomenclatural errors, including those made by Worthy and me, but this debate will no doubt make all of us more careful in the future. Ancient DNA will provide a critical source of characters in any future taxonomic revisions and, hopefully, resolve the tangled web of splitting and lumping that has characterized moa taxonomy in the past. I am sure that if Ned Johnson were still alive, he would agree that this represents a molecular advance in the study of geographic variation and speciation.

Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.

Comment cette classification a été obtenuedéplier

Prédiction machine sur la base complète

Imitation des enseignants

Ni prévalence calibrée, ni vérité terrain. Validation humaine à venir. Le volet Gemma est une étiquette directe du modèle pour chaque travail de la base, lue sur la notice réduite au titre. Le volet Codex est un classifieur appris des 10 348 étiquettes directes de Codex et calibré sur les taux pondérés de l'échantillon; les champs sans appui suffisant ne portent aucun appel Codex. Le mode candidate est l'union des deux volets; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont pas des étiquettes humaines.

score de la tête « metaresearch » (Codex)0,037
score de la tête « metaresearch » (Gemma)0,115
Version: metacan-v3-hybrid-931329e0061cStatut de validation: machine_predicted_unvalidated
Catégories candidatesaucune
Catégories consensuellesaucune
DomaineSignal candidat: aucune · Signal consensuel: aucune
Devis d'étudeSignal candidat: Sans objet · Signal consensuel: Sans objet
GenreSignal candidat: Commentaire · Signal consensuel: Commentaire
Score de désaccord entre enseignants0,037
Score d'incertitude au seuil0,197

Scores du classifieur distillé par catégorie (deux têtes)

CatégorieCodexGemma
Métarecherche0,0370,115
Méta-épidémiologie (sens strict)0,0010,001
Méta-épidémiologie (sens large)0,0030,002
Bibliométrie0,0030,004
Études des sciences et des technologies0,0080,030
Communication savante0,0070,018
Science ouverte0,0070,009
Intégrité de la recherche0,0340,073
Charge utile insuffisante (le modèle a refusé de juger)0,0060,006

Scores machine (provisoires)

Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.

Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.

Tête enseignante Opus0,075
Tête enseignante GPT0,226
Écart entre enseignants0,150 · la distance entre les deux têtes enseignantes sur ce seul travail
Statut de validationscore_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découle

Classification

machine, non validée

Prédiction automatique; un appel candidat d’une seule source (Gemma direct ou Codex distillé), pas un consensus.

Les modèles n’ont appliqué aucune catégorie : rien dans la taxonomie ne correspondait à ce travail.
Devis d'étudeSans objet
Domainenon disponible
GenreCommentaire

Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».

En bref

Citations0
Publié2007
Routes d'admission1
Résumé présentnon

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