Reflex MammaPrint testing on breast core biopsies: A single center experience.
Notice bibliographique
Résumé
e12581 Background: Breast cancer genomic assays are well established in the adjuvant setting, but still evolving in the neoadjuvant setting. Recent data shows that MammaPrint (MP)/BluePrint (BP) genomic assays in the neoadjuvant setting can reclassify hormone receptor positive (HR+), HER2 negative (HER2-) tumors into intrinsic phenotypes with corresponding responses to neoadjuvant therapy (NAC). We performed reflex MP/BP assays on invasive breast cancer core biopsies and evaluated the relationships between clinical risk, molecular risk and intrinsic phenotype. Methods: 150 consecutive HR+, HER2- invasive breast cancers were identified by core biopsy in a tertiary care cancer center and underwent reflex MP/BP testing by an external central laboratory between July 2021 and Jan 2022. Retrospective review was completed on patient demographics and tumor characteristics; descriptive statistics were performed. Results: Of 150 newly diagnosed HR+ HER2- breast cancers, 141 successfully had a reflex MP/BP test performed; 9 were not performed due to technical feasibility or clerical error. Of the 141 patients with a completed MP/BP assay, 7 had recurrent disease, and 8 had metastatic disease, these were excluded. Patients were categorized as clinically high (cHR) or low risk (cLR) using the criteria from the MINDACT trial and as molecularly high risk (MP HR) or low risk (MP LR) per their MP results. We then grouped patients with discordant clinical and molecular risk. We then examined clinical features and NAC receipt amongst these clinical and molecular risk groups. Conclusions: There was discordance between clinical and molecular risk in 38% of our cohort, 20% were cLR/MP and 18% were cHR/MP LR. The decision to give NAC was primarily driven by clinical risk as only 1 patient with cLR/MP HR received NAC. Amongst cHR/MP LR 87% did not get NAC, but this appears to have been a clinical decision as only 7 of these patients had a pre-operative oncology visit at which MP/BP was mentioned. Most (72%) of > cN1 patients received NAC, of the 5 who didn’t, 4 were in the MP LR group and had a pre-operative oncology visit where MP was mentioned. In this select group the genomic assay may have influenced the decision to withhold NAC. Reflex genomic assays for HR+ HER2- breast cancer may not be useful; the decision to integrate molecular risk into the decision for NAC is multifactorial and stage of disease may be most impactful. Further work is needed in this area. [Table: see text] [Table: see text]
Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.
Comment cette classification a été obtenuedéplier
Prédiction machine sur la base complète
Imitation des enseignantsNi prévalence calibrée, ni vérité terrain. Validation humaine à venir. Le volet Gemma est une étiquette directe du modèle pour chaque travail de la base, lue sur la notice réduite au titre. Le volet Codex est un classifieur appris des 10 348 étiquettes directes de Codex et calibré sur les taux pondérés de l'échantillon; les champs sans appui suffisant ne portent aucun appel Codex. Le mode candidate est l'union des deux volets; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont pas des étiquettes humaines.
Scores du classifieur distillé par catégorie (deux têtes)
| Catégorie | Codex | Gemma |
|---|---|---|
| Métarecherche | 0,002 | 0,005 |
| Méta-épidémiologie (sens strict) | 0,001 | 0,000 |
| Méta-épidémiologie (sens large) | 0,000 | 0,000 |
| Bibliométrie | 0,001 | 0,001 |
| Études des sciences et des technologies | 0,000 | 0,000 |
| Communication savante | 0,001 | 0,001 |
| Science ouverte | 0,001 | 0,001 |
| Intégrité de la recherche | 0,000 | 0,000 |
| Charge utile insuffisante (le modèle a refusé de juger) | 0,002 | 0,001 |
Scores machine (provisoires)
Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.
Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.
score_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découleClassification
machine, non validéePrédiction automatique; un appel candidat d’une seule source (Gemma direct ou Codex distillé), pas un consensus.
Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».