MétaCan
Menu
Retour à la cohorte
Enregistrement W4379928204 · doi:10.3176/earth.2023.21

Chitinozoan nomenclature and databases

2023· article· en· W4379928204 sur OpenAlexaboutno aff
Steven Camina, Olle Hints, Anthony Butcher

Notice bibliographique

RevueProceedings of the Estonian Academy of Sciences Geology · 2023
Typearticle
Langueen
DomaineEnvironmental Science
ThématiqueParasite Biology and Host Interactions
Établissements canadiensnon disponible
Organismes subventionnairesnon disponible
Mots-clésNomenclatureDatabaseComputer scienceInformation retrievalBiologyZoologyTaxonomy (biology)

Résumé

récupéré en direct d'OpenAlex

In 1930, Alfred Eisenack suggested the term ‘chitinozoan’ for a microfossil group that he discovered from erratic boulders on the Baltic Sea coast. They are known from the Early Ordovician until the end of the Devonian and have a broad paleogeographic distribution in marine deposits. Even though they are useful biostratigraphy markers, their biological affinity is unknown. Several theories have been proposed through the years, with the most widely accepted to date being that they are the eggs of soft-bodied metazoans. Nevertheless, some studies suggest that chitinozoans are fossils of individual microorganisms (protists) rather than of metazoan origin. The aim of this contribution is to summarize the advantages of the current chitinozoan classification and analyze the status quo of the current chitinozoan databases in order to make the classification less subjective and data more accessible. Since the beginning of their study, chitinozoan workers have used a binominal taxonomy describing genera and species based on morphological features. In 1999, Florentin Paris and co-authors introduced a revised suprageneric classification regulated by the International Code of Zoological Nomenclature (ICZN), which proved very efficient and has since been followed by all workers on this group. According to the ICZN, the concept of ‘species’ is the only one that refers to an actual population or entity and all higher categories are abstract entities. This means that any feature can be selected to separate the genera and families. In chitinozoans, scanning electron microscope (SEM) images are used to distinguish morphologic features such as the vesicle, aperture, neck, and ornamentation. These main characteristics were used as the basis of classification. The category of ‘Order’ is not regulated by the ICZN; however, in 1972, Eisenack proposed the useful subdivisions of ‘Operculatifera’ and ‘Prosomatifera’ that have been maintained until today. This classification gives stability to the nomenclature, prevents overlap of generic descriptions, and provides a framework for phylogenetic analysis. It was highlighted by the authors of this classification that a computer-assisted system of identification could be developed if a digital taxonomic database were available. There are several databases with the potential to be useful for chitinozoan taxonomic classification. ZooBank is the official registry of the ICZN. It records nomenclatural acts and includes the original descriptions of new scientific names and their publications. For occurrence-based paleontological records, the Paleobiology Database and the Geobiodiversity Database are extremely useful. Both have an intuitive and simple interface for the user to see the taxa distribution and taxonomic information. These three databases complement each other, but they either have few chitinozoan records or lack complete taxonomic information. There is a desktop taxonomic database CHITINOVOSP for chitinozoans, designed by Florentin Paris, which has proven to be useful but needs to be purchased. Achab et al. developed in Canada another chitinozoan database CHITINOS that is not currently used. The most complete and useful chitinozoan database at present seems to be CHITDB, where browsing and searching for chitinozoan taxa, samples, sections, references, and SEM images is simple. However, it is focused only on material from the Baltic region. Databases such as the Encyclopedia of Life, the Catalogue of Life and the World Register of Marine Species lack chitinozoan records but they are collaborative and provide free global access to knowledge. This collaborative formula seems to be efficient enough to have a trusted digital source of information. Since at present the taxonomic classification of chitinozoans is no longer under discussion and it has proven to be workable, the following step for chitinozoan researchers would be to have a complete database. We believe that a collaborative effort should be made as there are only a few specialists in the area nowadays. It is not crucial which database should be completed, but it should be useful, as complete as possible, and freely accessible. In particular, we believe that the Baltic CHITDB database is an excellent starting platform to achieve that goal in the near future.

Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.

Comment cette classification a été obtenuedéplier

Prédiction machine sur la base complète

Imitation des enseignants

Ni prévalence calibrée, ni vérité terrain. Validation humaine à venir. Le volet Gemma est une étiquette directe du modèle pour chaque travail de la base, lue sur la notice réduite au titre. Le volet Codex est un classifieur appris des 10 348 étiquettes directes de Codex et calibré sur les taux pondérés de l'échantillon; les champs sans appui suffisant ne portent aucun appel Codex. Le mode candidate est l'union des deux volets; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont pas des étiquettes humaines.

score de la tête « metaresearch » (Codex)0,002
score de la tête « metaresearch » (Gemma)0,013
Version: metacan-v3-hybrid-931329e0061cStatut de validation: machine_predicted_unvalidated
Catégories candidatesaucune
Catégories consensuellesaucune
DomaineSignal candidat: aucune · Signal consensuel: aucune
Devis d'étudeSignal candidat: Sans objet · Signal consensuel: Sans objet
GenreSignal candidat: Méthodes · Signal consensuel: aucune
Score de désaccord entre enseignants0,032
Score d'incertitude au seuil0,073

Scores du classifieur distillé par catégorie (deux têtes)

CatégorieCodexGemma
Métarecherche0,0020,013
Méta-épidémiologie (sens strict)0,0010,001
Méta-épidémiologie (sens large)0,0010,001
Bibliométrie0,0320,039
Études des sciences et des technologies0,0020,001
Communication savante0,0070,005
Science ouverte0,0040,006
Intégrité de la recherche0,0010,002
Charge utile insuffisante (le modèle a refusé de juger)0,0220,020

Scores machine (provisoires)

Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.

Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.

Tête enseignante Opus0,031
Tête enseignante GPT0,337
Écart entre enseignants0,306 · la distance entre les deux têtes enseignantes sur ce seul travail
Statut de validationscore_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découle

Classification

machine, non validée

Prédiction automatique; un appel candidat d’une seule source (Gemma direct ou Codex distillé), pas un consensus.

Les modèles n’ont appliqué aucune catégorie : rien dans la taxonomie ne correspondait à ce travail.
Devis d'étudeSans objet
Domainenon disponible
GenreMéthodes

Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».

En bref

Citations1
Publié2023
Routes d'admission1
Résumé présentoui

Explorer davantage

Même revueProceedings of the Estonian Academy of Sciences GeologyMême sujetParasite Biology and Host InteractionsTravaux en français237 207