Genetic analysis of stress hormone levels in hair of healthy nursery pigs and their relationships with backtest responses
Notice bibliographique
Résumé
This study explored the genetics of the levels of stress hormones (cortisol, cortisone, DHEA, and DHEA-S) in hair of 863 clinically healthy Yorkshire × Landrace male pigs at ∼40 days of age and evaluated their potential as biomarkers of innate stress response by estimating genetic correlations with responses to a 30 s backtest performed at ∼27 days of age. Backtest responses included the number and intensity of vocalizations (VN and VI) and struggles (SN and SI). With pigs genotyped using a 50 K single nucleotide polymorphism (SNP) panel that was imputed to 650 K SNPs, heritability estimates for the levels of cortisol, cortisone, DHEA, and DHEA-S were 0.33, 0.04, 0, and 0.31, respectively, while those for backtest responses ranged from 0.26 to 0.57. Litter effects accounted for 9 to 16% of the phenotypic variance for stress hormone levels and none for backtest responses. Genetic correlation estimates among stress hormone levels were strongest between cortisol and cortisone (0.99 ± 0.12), while those among backtest responses ranged from 0.60 to 0.99. Cortisol was estimated to have moderate genetic correlations with VN (0.24 ± 0.19) and VI (0.50 ± 0.24) but not with SN and SI. Genome-wide association studies identified a major quantitative trait locus (QTL) for hair cortisol levels near the glucocorticoid receptor gene (NR3C1) that explained 45.3% of the genetic variance and that may be different than a causative mutation that was previously identified in this gene for cortisol levels in porcine blood. An extra copy of the minor allele (frequency = 9%) at the lead SNP for this QTL, rs341258564 originated from both parental breeds and reduced levels of cortisol by 30 ± 6% and of cortisone by 17 ± 4%, and increased VN by 5 ± 2%. Additional QTL with smaller effects (1.0 to 11.1% of genetic variance) were identified for DHEA-S, cortisol/DHEA-S, cortisone/DHEA-S, VI, and VN. Ranked gene set enrichment analyses of 0.25 Mb windows based on genetic variance explained showed that windows associated with glucocorticoid levels were enriched for biological terms related to energy production and suppression of inflammation. In contrast, those associated with DHEA-S were enriched for biological processes related to immunity activation and gene transcriptional and post-transcriptional regulation. These findings establish the genetic basis of stress response in young and clinically healthy pigs, identify the genomic location of a major QTL for hair cortisol levels, and show that cortisol levels in hair of young and healthy pigs are potential genetic biomarkers for the innate coping response style of pigs to noninfectious stressors. These results open avenues that can facilitate selection of pigs that cope better with noninfectious stressors.
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Comment cette classification a été obtenuedéplier
Prédiction distillée sur la base complète
Imitation des enseignantsNi prévalence calibrée, ni vérité terrain. Validation humaine à venir. Apprise à partir de 10 348 étiquettes directes de Codex et de 10 348 étiquettes directes de Gemma. Le mode candidate est l'union des têtes enseignantes seuillées; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont ni des étiquettes humaines ni des étiquettes directes de modèles de pointe.
Scores Codex et Gemma par catégorie
| Catégorie | Codex | Gemma |
|---|---|---|
| Métarecherche | 0,000 | 0,000 |
| Méta-épidémiologie (sens strict) | 0,000 | 0,000 |
| Méta-épidémiologie (sens large) | 0,000 | 0,000 |
| Bibliométrie | 0,000 | 0,001 |
| Études des sciences et des technologies | 0,000 | 0,000 |
| Communication savante | 0,000 | 0,000 |
| Science ouverte | 0,000 | 0,000 |
| Intégrité de la recherche | 0,000 | 0,000 |
| Charge utile insuffisante (le modèle a refusé de juger) | 0,000 | 0,000 |
Scores machine (provisoires)
Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.
Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.
score_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découleClassification
machine, non validéePrédiction automatique; un appel candidat d’une seule tête enseignante, pas un consensus.
Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».