64 Moderate body weight loss and one-carbon metabolite supplementation in early gestation beef heifers alters the fetal liver transcriptome.
Notice bibliographique
Résumé
Abstract Moderate body weight (BW) loss occurs in production cycles, particularly among heifers with increased nutrient demand from pregnancy, ultimately hindering fetal growth and development. Feed costs and associated labor create a challenge for providing supplemental feed. However, stimulating the one-carbon metabolite cycle may alleviate this problem. The objective of this study was to determine if moderate changes in rate of BW gain and one-carbon metabolite (OCM) supplementation in early gestation beef heifers alters fetal liver gene expression. Angus-cross heifers (n = 72) underwent estrus synchronization and were bred to a single sire using female-sexed semen. At breeding, heifers were stratified by BW into a 2 × 2 factorial of treatments: fed to gain 0.45 kg/d (CON) or lose 0.23 kg/d (RES) BW and to receive corn carrier with OCM supplements (+OCM) or without (−OCM) from d 0 to 63 of gestation. The OCM supplements consisted of vitamin B12 (20 mg/wk) and folate (320 mg/wk) injections and dietary rumen-protected methionine (7.4 g/d) and choline (44.4 g/d). On d 35 of gestation, pregnancy diagnosis confirmation was performed using transrectal ultrasonography. The heifers confirmed pregnant with female fetuses across treatments were CON−OCM (n = 7), CON+OCM (n = 7), RES−OCM (n = 9), RES+OCM (n = 8). On d 63 of gestation, heifers were slaughtered and the fetus was excised and dissected for fetal liver collection. Total RNA was extracted and subjected to quality control, then sequenced on the Illumina NovaSeq 6000 platform. Reads were mapped to the ARS-UCD1.2 reference genome using STAR, then differential gene expression was analyzed using DESeq2 (log2fold ≥ |1| and P ≤ 0.05). KEGG pathway enrichment was conducted using ShinyGO at nGenes ≥ 2 and FDR ≤ 0.10. There were 114 differentially expressed genes (DEG) in RES+OCM vs. CON−OCM. HTRA4 is involved in apoptosis and programmed cell death, and was upregulated > 2.5-fold in RES+OCM. Whereas, ADCYAP1R1, a gene involved in regulating stress responses, was downregulated > 6-fold in RES+OCM. There were 108 DEG in RES−OCM vs. CON+OCM, and the GnRH secretion pathway was enriched. No other pathways were enriched among other contrasts. PRSS56, a negative regulator of MYRF, was downregulated > 3.5-fold in RES−OCM. There were 78 DEG in RES+OCM vs. CON+OCM. There were 155 DEG in RES−OCM vs. CON−OCM. PRSS56 was downregulated 2.9-fold in RES−OCM. There were 108 DEG in CON+OCM vs. CON−OCM. SOX8, a gene involved in organogenesis was upregulated 3-fold in CON+OCM, while ADCYAP1R1 was downregulated > 6-fold. There were 113 DEG in RES+OCM vs. RES−OCM. Taken together, moderate BW loss and one-carbon metabolite supplementation during early gestation altered fetal liver gene expression. Most notably, ADCYAP1R1 was down regulated in response to OCM supplementation in both CON and RES groups.
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Comment cette classification a été obtenuedéplier
Prédiction machine sur la base complète
Imitation des enseignantsNi prévalence calibrée, ni vérité terrain. Validation humaine à venir. Le volet Gemma est une étiquette directe du modèle pour chaque travail de la base, lue sur la notice réduite au titre. Le volet Codex est un classifieur appris des 10 348 étiquettes directes de Codex et calibré sur les taux pondérés de l'échantillon; les champs sans appui suffisant ne portent aucun appel Codex. Le mode candidate est l'union des deux volets; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont pas des étiquettes humaines.
Scores du classifieur distillé par catégorie (deux têtes)
| Catégorie | Codex | Gemma |
|---|---|---|
| Métarecherche | 0,000 | 0,000 |
| Méta-épidémiologie (sens strict) | 0,000 | 0,000 |
| Méta-épidémiologie (sens large) | 0,000 | 0,000 |
| Bibliométrie | 0,000 | 0,000 |
| Études des sciences et des technologies | 0,000 | 0,000 |
| Communication savante | 0,000 | 0,000 |
| Science ouverte | 0,000 | 0,000 |
| Intégrité de la recherche | 0,000 | 0,000 |
| Charge utile insuffisante (le modèle a refusé de juger) | 0,001 | 0,000 |
Scores machine (provisoires)
Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.
Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.
score_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découleClassification
machine, non validéePrédiction automatique; un appel candidat d’une seule source (Gemma direct ou Codex distillé), pas un consensus.
Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».