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Enregistrement W6920617356 · doi:10.60692/xvx6t-4tg55

A Role for Epsin N-terminal Homology/AP180 N-terminal Homology (ENTH/ANTH) Domains in Tubulin Binding

2003· article· en· W6920617356 sur OpenAlexaff

Notice bibliographique

RevueGreater South Information System · 2003
Typearticle
Langueen
DomaineBiochemistry, Genetics and Molecular Biology
ThématiqueMicrotubule and mitosis dynamics
Établissements canadiensRobarts Clinical TrialsUniversity of British ColumbiaMcGill UniversityMontreal Neurological Institute and Hospital
Organismes subventionnairesnon disponible
Mots-clésMicrotubuleTubulinHomology (biology)Amino acidDissociation constantProtein–protein interactionProtein domain

Résumé

récupéré en direct d'OpenAlex

The epsin N-terminal homology (ENTH) domain is a protein module of ∼150 amino acids found at the N terminus of a variety of proteins identified in yeast, plants, nematode, frog, and mammals. ENTH domains comprise multiple α-helices folded upon each other to form a compact globular structure that has been implicated in interactions with lipids and proteins. In characterizing this evolutionarily conserved domain, we isolated and identified tubulin as an ENTH domain-binding partner. The interaction, which is direct and has a dissociation constant of ∼1 μm, was observed with ENTH domains of proteins present in various species. Tubulin is co-immunoprecipitated from rat brain extracts with the ENTH domain-containing proteins, epsins 1 and 2, and punctate epsin staining is observed along the microtubule cytoskeleton of dissociated cortical neurons. Consistent with a role in microtubule processes, the over-expression of epsin ENTH domain in PC12 cells stimulates neurite outgrowth. These data demonstrate an evolutionarily conserved property of ENTH domains to interact with tubulin and microtubules. The epsin N-terminal homology (ENTH) domain is a protein module of ∼150 amino acids found at the N terminus of a variety of proteins identified in yeast, plants, nematode, frog, and mammals. ENTH domains comprise multiple α-helices folded upon each other to form a compact globular structure that has been implicated in interactions with lipids and proteins. In characterizing this evolutionarily conserved domain, we isolated and identified tubulin as an ENTH domain-binding partner. The interaction, which is direct and has a dissociation constant of ∼1 μm, was observed with ENTH domains of proteins present in various species. Tubulin is co-immunoprecipitated from rat brain extracts with the ENTH domain-containing proteins, epsins 1 and 2, and punctate epsin staining is observed along the microtubule cytoskeleton of dissociated cortical neurons. Consistent with a role in microtubule processes, the over-expression of epsin ENTH domain in PC12 cells stimulates neurite outgrowth. These data demonstrate an evolutionarily conserved property of ENTH domains to interact with tubulin and microtubules. The epsin N-terminal homology (ENTH) 1The abbreviations used are: ENTH, epsin N-terminal homology; ANTH, AP180 N-terminal homology; E/ANTH, epsin/AP180 N-terminal homology; DH, Dbl homology; GFP, green fluorescent protein; GST, glutathione S-transferase; HIP, Huntingtin-interacting protein; MAP, microtubule-associated protein; MES, 4-morpholineethanesulfonic acid; MP90, mitotic phosphoprotein of 90 kDa; PH, pleckstrin homology; PIPES, 1,4-piperazinediethanesulfonic acid; PtdIns(4,5)P2, phosphatidylinositol 4,5-bisphosphate; SH3, Src homology 3; TRITC, tetramethylrhodamine isothiocyanate. domain is an evolutionarily conserved globular module of ∼150 amino acids that occurs at the amino terminus of a variety of proteins (1Kay B.K. Yamabhai M. Wendland B. Emr S.D. Protein Sci. 1999; 8: 435-438Crossref PubMed Scopus (102) Google Scholar, 2Chen H. Fre S. Slepnev V.I. Capua M.R. Takei K. Butler M.H. Di Fiore P.P. De Camilli P. Nature. 1998; 394: 793-797Crossref PubMed Scopus (273) Google Scholar). Originally noted in the plant protein, Af10 (3Jones H.D. Smith S.J. Desikan R. Plakidou-Dymock S. Lovegrove A. Hooley R. Plant Cell. 1998; 10: 245-254Crossref PubMed Scopus (113) Google Scholar), the ENTH domain has subsequently been characterized in epsins (2Chen H. Fre S. Slepnev V.I. Capua M.R. Takei K. Butler M.H. Di Fiore P.P. De Camilli P. Nature. 1998; 394: 793-797Crossref PubMed Scopus (273) Google Scholar) and enthoprotin (4Wasiak S. Legendre-Guillemin V. Puertollano R. Blondeau F. Girard M. de Heuvel E. Boismenu D. Bell A.W. Bonifacino J.S. McPherson P.S. J. Cell Biol. 2002; 158: 855-862Crossref PubMed Scopus (167) Google Scholar) (also termed epsinR (5Hirst J. Motley A. Harasaki K. Peak Chew S.Y. Robinson M.S. Mol. Biol. Cell. 2003; 14: 625-641Crossref PubMed Scopus (180) Google Scholar, 6Mills I.G. Praefcke G.J.K. Vallis Y. Peter B.J. Olesen L.E. Gallop J.L. Butler P.J.G. Evans P.R. McMahon H.T. J. Cell Biol. 2003; 160: 213-222Crossref PubMed Scopus (204) Google Scholar) or Clint (7Kalthoff C. Groos S. Kohl R. Mahrhold S. Ungewickell E.J. Mol. Biol. Cell. 2002; 13: 4060-4073Crossref PubMed Scopus (106) Google Scholar)), and in yeast proteins including Ent1p/Ent2p (8Wendland B. Steece K.E. Emr S.D. EMBO J. 1999; 18: 4383-4393Crossref PubMed Scopus (207) Google Scholar, 9Wendland B. Emr S.D. J. Cell Biol. 1998; 141: 71-84Crossref PubMed Scopus (202) Google Scholar) and Ent3p (10Duncan M.C. Costaguta G. Payne G.S. Nat. Cell Biol. 2003; 5: 77-81Crossref PubMed Scopus (83) Google Scholar). Adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM), Huntingtin-interacting protein-1 (HIP1) and HIP12, and the yeast proteins yAP180 and Sla2p contain a module that is so similar in structure to the epsin ENTH domain that they were initially denoted ENTH-bearing proteins (11Hyman J. Chen H. Di Fiore P.P. De Camilli P. Brunger A.T. J. Cell Biol. 2000; 149: 537-546Crossref PubMed Scopus (146) Google Scholar, 12Itoh T. Koshiba S. Kigawa T. Kikuchi A. Yokoyama S. Takenawa T. Science. 2001; 291: 1047-1051Crossref PubMed Scopus (392) Google Scholar, 13Ford M.G. Pearse B.M. Higgins M.K. Vallis Y. Owen D.J. Gibson A. Hopkins C.R. Evans P.R. McMahon H.T. Science. 2001; 291: 1051-1055Crossref PubMed Scopus (611) Google Scholar). However, recent structural studies have refined our understanding such that ENTH-like domains from these proteins have been re-designated ANTH domain-containing proteins in accordance with their higher structural similarity to AP180 rather than epsin (14Ford M.G. Mills I.G. Peter B.J. Vallis Y. Praefcke G.J. Evans P.R. McMahon H.T. Nature. 2002; 419: 361-366Crossref PubMed Scopus (811) Google Scholar). In an effort to simplify the nomenclature applied in this study, we refer to these homologous structures as E/ANTH domains when collectively discussing proteins bearing either domain, but maintain the ENTH or ANTH nomenclature when discussing individual proteins. A common feature among many E/ANTH domain-bearing proteins is that their C termini contain peptide motifs, indicative of a functional role in clathrin-mediated membrane budding including clathrin and clathrin adaptor protein-binding elements (1Kay B.K. Yamabhai M. Wendland B. Emr S.D. Protein Sci. 1999; 8: 435-438Crossref PubMed Scopus (102) Google Scholar, 15De Camilli P. Chen H. Hyman J. Panepucci E. Bateman A. Brunger A.T. FEBS Lett. 2002; 513: 11-18Crossref PubMed Scopus (125) Google Scholar). In addition to their interactions with multiple endocytic components, many of the currently characterized E/ANTH proteins, including epsin, AP180, and HIP1/12, are localized to clathrin-coated pits where they function in clathrin-mediated endocytosis (2Chen H. Fre S. Slepnev V.I. Capua M.R. Takei K. Butler M.H. Di Fiore P.P. De Camilli P. Nature. 1998; 394: 793-797Crossref PubMed Scopus (273) Google Scholar, 16Ye W. Lafer E.M. J. Neurosci. Res. 1995; 41: 15-26Crossref PubMed Scopus (70) Google Scholar, 17Chen H. Slepnev V.I. Di Fiore P.P. De Camilli P. J. Biol. Chem. 1999; 274: 3257-3260Abstract Full Text Full Text PDF PubMed Scopus (113) Google Scholar, 18Rosenthal J.A. Chen H. Slepnev V.I. Pellegrini L. Salcini A.E. Di Fiore P.P. De Camilli P. J. Biol. Chem. 1999; 274: 33959-33965Abstract Full Text Full Text PDF PubMed Scopus (154) Google Scholar, 19Mishra S.K. Agostinelli N.R. Brett T.J. Mizukami I. Ross T.S. Traub L.M. J. Biol. Chem. 2001; 276: 46230-46236Abstract Full Text Full Text PDF PubMed Scopus (112) Google Scholar, 20Metzler M. Legendre-Guillemin V. Gan L. Chopra V. Kwok A. McPherson P.S. Hayden M.R. J. Biol. Chem. 2001; 276: 39271-39276Abstract Full Text Full Text PDF PubMed Scopus (154) Google Scholar, 21Engqvist-Goldstein A.E. Warren R.A. Kessels M.M. Keen J.H. Heuser J. Drubin D.G. J. Cell Biol. 2001; 154: 1209-1223Crossref PubMed Scopus (200) Google Scholar, 22Legendre-Guillemin V. Metzler M. Charbonneau M. Gan L. Chopra V. Philie J. Hayden M.R. McPherson P.S. J. Biol. Chem. 2002; 277: 19897-19904Abstract Full Text Full Text PDF PubMed Scopus (83) Google Scholar, 23Ye W. Lafer E.M. J. Biol. Chem. 1995; 270: 10933-10939Abstract Full Text Full Text PDF PubMed Scopus (57) Google Scholar, 24Drake M.T. Downs M.A. Traub L.M. J. Biol. Chem. 2000; 275: 6479-6489Abstract Full Text Full Text PDF PubMed Scopus (121) Google Scholar, 25Lindner R. Ungewickell E. J. Biol. Chem. 1992; 267: 16567-16573Abstract Full Text PDF PubMed Google Scholar). Interestingly, enthoprotin is unique in this group because it is predominantly localized to the trans-Golgi network rather than the plasma membrane, and it appears to regulate clathrin-mediated budding events occurring specifically along the trans-Golgi network and endosomal pathway (4Wasiak S. Legendre-Guillemin V. Puertollano R. Blondeau F. Girard M. de Heuvel E. Boismenu D. Bell A.W. Bonifacino J.S. McPherson P.S. J. Cell Biol. 2002; 158: 855-862Crossref PubMed Scopus (167) Google Scholar, 5Hirst J. Motley A. Harasaki K. Peak Chew S.Y. Robinson M.S. Mol. Biol. Cell. 2003; 14: 625-641Crossref PubMed Scopus (180) Google Scholar, 6Mills I.G. Praefcke G.J.K. Vallis Y. Peter B.J. Olesen L.E. Gallop J.L. Butler P.J.G. Evans P.R. McMahon H.T. J. Cell Biol. 2003; 160: 213-222Crossref PubMed Scopus (204) Google Scholar, 7Kalthoff C. Groos S. Kohl R. Mahrhold S. Ungewickell E.J. Mol. Biol. Cell. 2002; 13: 4060-4073Crossref PubMed Scopus (106) Google Scholar, 10Duncan M.C. Costaguta G. Payne G.S. Nat. Cell Biol. 2003; 5: 77-81Crossref PubMed Scopus (83) Google Scholar). Recent studies have demonstrated that the E/ANTH domains of epsin and AP180 can mediate lipid binding, particularly to phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2), and that this interaction is required for efficient clathrin-mediated endocytosis i

Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.

Comment cette classification a été obtenuedéplier

Prédiction machine sur la base complète

Imitation des enseignants

Ni prévalence calibrée, ni vérité terrain. Validation humaine à venir. Le volet Gemma est une étiquette directe du modèle pour chaque travail de la base, lue sur la notice réduite au titre. Le volet Codex est un classifieur appris des 10 348 étiquettes directes de Codex et calibré sur les taux pondérés de l'échantillon; les champs sans appui suffisant ne portent aucun appel Codex. Le mode candidate est l'union des deux volets; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont pas des étiquettes humaines.

score de la tête « metaresearch » (Codex)0,000
score de la tête « metaresearch » (Gemma)0,000
Version: metacan-v3-hybrid-931329e0061cStatut de validation: machine_predicted_unvalidated
Catégories candidatesaucune
Catégories consensuellesaucune
DomaineSignal candidat: aucune · Signal consensuel: aucune
Devis d'étudeSignal candidat: Expérimental (laboratoire) · Signal consensuel: Expérimental (laboratoire)
GenreSignal candidat: Empirique · Signal consensuel: Empirique
Score de désaccord entre enseignants0,001
Score d'incertitude au seuil0,003

Scores du classifieur distillé par catégorie (deux têtes)

CatégorieCodexGemma
Métarecherche0,0000,000
Méta-épidémiologie (sens strict)0,0000,000
Méta-épidémiologie (sens large)0,0000,000
Bibliométrie0,0000,000
Études des sciences et des technologies0,0000,000
Communication savante0,0000,000
Science ouverte0,0000,000
Intégrité de la recherche0,0000,000
Charge utile insuffisante (le modèle a refusé de juger)0,0010,000

Scores machine (provisoires)

Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.

Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.

Tête enseignante Opus0,013
Tête enseignante GPT0,223
Écart entre enseignants0,210 · la distance entre les deux têtes enseignantes sur ce seul travail
Statut de validationscore_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découle

Classification

machine, non validée

Prédiction automatique; un appel candidat d’une seule source (Gemma direct ou Codex distillé), pas un consensus.

Les modèles n’ont appliqué aucune catégorie : rien dans la taxonomie ne correspondait à ce travail.
Devis d'étudeExpérimental (laboratoire)
Domainenon disponible
GenreEmpirique

Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».

En bref

Citations0
Publié2003
Routes d'admission1
Résumé présentoui

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