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Enregistrement W6921359778 · doi:10.6084/m9.figshare.16696540

Additional file 1 of Ackr3-Venus knock-in mouse lights up brain vasculature

2021· article· en· W6921359778 sur OpenAlexaff

Notice bibliographique

RevueFigshare · 2021
Typearticle
Langueen
DomaineMedicine
ThématiqueSpaceflight effects on biology
Établissements canadiensUniversité de MontréalMcGill University
Organismes subventionnairesnon disponible
Mots-clésTransfectionReceptorStimulationImmunohistochemistryDAPIStainingCytoplasmConfocal

Résumé

récupéré en direct d'OpenAlex

Additional file 1: Figure S1. G protein activation profile. A–C HEK-293 cells were co-transfected with the indicated receptor (hDOR, mACKR3 or mACKR3-Venus), Gβ1, hGγ3-RlucII (BRET2 sensor donor), hGRK2-GFP10 (BRET2 sensor acceptor) and the indicated human (h) or mouse (m) Gα subunits. Mock condition is with cells not co-transfected with a Gα subunit encoding cDNA, thus detecting receptor-mediated activation of endogenous G proteins. A G protein activation profile of the human Delta opioid receptor (hDOR) following a 10 min stimulation with Met-Enkephalin (30 µM). B, C G protein activation profile of the untagged (ACKR3) or Venus-tagged (ACKR3-Venus) mouse ACKR3 receptor following a 10 min stimulation with CXCL12 (1 µM). Data are expressed as the mean ± SEM of 3 independent experiments. D HEK-293 cells were transiently transfected with ACKR3 or ACKR3-Venus and stimulated with 50 nM CXCL11-12AF647 for 20 min at 37 °C and scavenging was assessed by confocal microscopy. Nuclei were stained with DAPI. Cells not expressing ACKR3 or ACKR3-Venus (on the right, DAPI positive) did not take up CXCL11-12. Figure S2. H&E staining of ACKR3-Venus expression in peripheral mouse organs. Representative images of amplified ACKR3-Venus expression from eight peripheral tissues prepared from adult (P56 to P72) female and male mice. Organs from Ackr3Venus/Venus mice were sectioned transversely (4µm), and the expression of Venus was revealed with a mouse Venus (GFP) antibody (brown) and counterstained with hematoxylin labeling of cell nuclei (blue) and eosin labelling of cytoplasm (pink). Shown are representative images of organs where ACKR3-Venus is observed A heart (male) B stomach (female) C intestine (male) D kidney (female) E Thymus (female) F colon (female) G lung (male) H Fat (male). Arrowheads are located at regions with ACKR3-Venus expression. A yellow box on the inset indicates where the higher magnification image was taken. Organ sections were imaged on the Hamamatsu’s NanoZoomer® Digital Pathology system 2HT with 80× (large image) and 20× (inset) objectives. Scale bar is 25µm. Figure S3. ACKR3-Venus expression in spleen. Representative images of amplified ACKR3-Venus expression from adult (P56 to P72) female and male mice. Organs from Ackr3Venus/Venus mice were sectioned transversely (4 µm) and the expression of Venus was revealed with a mouse Venus (GFP) antibody. The consecutive slices were incubated with hematoxylin and eosin (H&E) staining to reveal the histological structure of the spleen. Shown are representative images where ACKR3-Venus is observed, A Red pulp B Peripheral region of white pulp C Central region of white pulp D Marginal zone E Red pulp (H&E) F Peripheral region of white pulp (H&E) G Central region of white pulp (H&E) H Marginal zone (H&E). Arrowheads are located at regions with ACKR3-Venus expression. A red or yellow box on the inset indicates where the higher magnification image was taken. Organ sections were imaged on the Hamamatsu’s NanoZoomer® Digital Pathology system 2HT with 80× (large image) and 20× (inset) objectives. Scale bar is 25µm. Figure S4. ACKR3-Venus expression in female peripheral organs. Representative images of amplified ACKR3-Venus expression from twelve peripheral tissues prepared from adult (P56 to P72) female mice. In addition to the eight organs which show considerable ACKR3-Venus expression (see Figure 5), shown here are all 12 organs side-by-side with the comparable control Ackr3WT/WT samples. Organs from Ackr3Venus/Venus mice were sectioned transversely (4 µm), and the expression of Venus was revealed with a mouse Venus (GFP) antibody (brown) and counterstained with hematoxylin labeling of cell nuclei (blue). Shown are representative images of the following organs A fat B stomach C intestine D colon E liver F lung G pancreas H heart I thymus J kidney K uterine horns L–N spleen L red pulp M marginal zone N white pulp. Expression in Ackr3Venus/Venus (n = 3) were compared to any background staining observed in Ackr3WT/WT (n = 3). A red box on the inset indicates where the higher magnification image was taken. Organ sections were imaged on the Hamamatsu’s NanoZoomer® Digital Pathology system 2HT with 80× (large image) 20× (inset) objectives. Scale bar is 25 µm. Figure S5. H&E staining with ACKR3-Venus expression in female peripheral organs. Representative images of amplified ACKR3-Venus expression from twelve peripheral tissues prepared from adult (P56 to P72) female mice. In addition to the eight organs which show considerable ACKR3-Venus expression (see Figure 4 and S3), shown here are all 12 organs side-by-side with the comparable control Ackr3WT/WT samples. Organs from Ackr3Venus/Venus mice were sectioned transversely (4 µm), and the expression of Venus was revealed with a mouse Venus (GFP) antibody (brown) and counterstained with hematoxylin and eosin (H&E) staining to reveal the histological structure. Shown are representative images of the following organs A fat B stomach C intestine D colon E liver F lung G pancreas H heart I thymus J kidney K uterine horns L–N spleen L red pulp M marginal zone N white pulp. Expression in Ackr3Venus/Venus (n = 3) were compared to any background staining observed in Ackr3WT/WT (n = 3). A yellow box on the inset indicates where the higher magnification image was taken. Organ sections were imaged on the Hamamatsu’s NanoZoomer® Digital Pathology system 2HT with 80× (large image) 20× (inset) objectives. Scale bar is 25 µm. Figure S6. ACKR3-Venus expression in male peripheral organs. Representative images of amplified ACKR3-Venus expression from thirteen peripheral tissues prepared from adult (P56 to P72) male mice. In addition to the eight tissues which show considerable ACKR3-Venus expression (see Figure 4 and S3), shown here are all 13 organs side-by-side with the comparable control Ackr3WT/WT samples. Organs from Ackr3Venus/Venus mice were sectioned transversely (4 µm), and the expression of Venus was detected with a mouse Venus (GFP) antibody (brown) and counterstained with hematoxylin labeling of cell nuclei (blue). Shown are representative images of the following organs A fat B stomach C intestine D colon E liver F lung G pancreas H heart I thymus J kidney K testis L seminal vesicles M–O spleen M red pulp N marginal zone O white pulp. Expression in Ackr3Venus/Venus (n = 3) were compared to any background staining observed in Ackr3WT/WT (n = 3). A red box on the inset indicates where the higher magnification image was taken. Organ sections were imaged on the Hamamatsu’s NanoZoomer® Digital Pathology system 2HT with 80× (large image) 20× (inset) objective. Scale bar is 100µm. Figure S7. H&E staining with ACKR3-Venus expression in male peripheral organs. Representative images of amplified ACKR3-Venus expression from twelve peripheral tissues prepared from adult (P56 to P72) male mice. In addition to the eight organs which show considerable ACKR3-Venus expression (see Figure 4 and S3), shown here are all 13 organs side-by-side with the comparable control Ackr3WT/WT samples. Organs from Ackr3Venus/Venus mice were sectioned transversely (4µm), and the expression of Venus was revealed with a mouse Venus (GFP) antibody (brown) and counterstained with hematoxylin and eosin (H&E) staining to reveal the histological structure. Shown are representative images of the following organs A fat B stomach C intestine D colon E liver F lung G pancreas H heart I thymus J kidney K testis L seminal vesicles M–O spleen M red pulp N marginal zone O white pulp. Expression in Ackr3Venus/Venus (n = 3) were compared to any background staining observed in Ackr3WT/WT (n = 3). A yellow box on the inset indicates where the higher magnification image was taken. Organ sections were imaged on the Hamamatsu’s NanoZoomer® Digital Pathology system 2HT with 80× (large image) 20× (inset) objectives. Scale bar is 25 µm. Figure S8. Intrinsic and amplified cellular expression of ACKR3-Venus in the adult brain of Ackr3WT/WT mice. To check for non-specific tissue signals generated by naturally occurring autofluorescence or non-specific interactions between antibodies, we immunostained Ackr3WT/WT brain sections (n = 4) and observed negligible background signals. Images were taken on Olympus IX73 epifluorescent microscope, 10× objective. Scale bar is 200 µm. Figure S9. Oligodendrocyte progenitor cell staining in Ackr3-Venus adult mouse brain. To examine oligodendrocyte progenitor cells, brain sections from Ackr3Venus/Venus mice were stained with anti-NG2 (cyan), a marker of oligodendrocytes progenitor cells and anti-Venus (red). Shown regions include A the olfactory bulb (OB), B orbital frontal cortex (OFC) and C Hippocampus (HPF). Amplified Venus and NG2 expression in brain sections were imaged on an Olympus FV1200 laser scanning confocal microscope, 20× objective. White boxes (left column) correspond to the 5× magnified images. Insets contain mouse brain reference atlas images from Allen Brain Atlas, with the region locations outlined by black boxes. Scale bar of 20× image is 100 µm (1st column) and 20 µm (2nd–3rd columns).

Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.

Comment cette classification a été obtenuedéplier

Prédiction machine sur la base complète

Imitation des enseignants

Ni prévalence calibrée, ni vérité terrain. Validation humaine à venir. Le volet Gemma est une étiquette directe du modèle pour chaque travail de la base, lue sur la notice réduite au titre. Le volet Codex est un classifieur appris des 10 348 étiquettes directes de Codex et calibré sur les taux pondérés de l'échantillon; les champs sans appui suffisant ne portent aucun appel Codex. Le mode candidate est l'union des deux volets; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont pas des étiquettes humaines.

score de la tête « metaresearch » (Codex)0,001
score de la tête « metaresearch » (Gemma)0,005
Version: metacan-v3-hybrid-931329e0061cStatut de validation: machine_predicted_unvalidated
Catégories candidatesCharge utile insuffisante (le modèle a refusé de juger)
Catégories consensuellesaucune
DomaineSignal candidat: aucune · Signal consensuel: aucune
Devis d'étudeSignal candidat: Expérimental (laboratoire) · Signal consensuel: aucune
GenreSignal candidat: Jeu de données · Signal consensuel: Jeu de données
Score de désaccord entre enseignants0,802
Score d'incertitude au seuil0,283

Scores du classifieur distillé par catégorie (deux têtes)

CatégorieCodexGemma
Métarecherche0,0010,005
Méta-épidémiologie (sens strict)0,0020,001
Méta-épidémiologie (sens large)0,0020,001
Bibliométrie0,0020,002
Études des sciences et des technologies0,0010,000
Communication savante0,0020,002
Science ouverte0,0020,001
Intégrité de la recherche0,0020,002
Charge utile insuffisante (le modèle a refusé de juger)0,8020,163

Scores machine (provisoires)

Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.

Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.

Tête enseignante Opus0,017
Tête enseignante GPT0,258
Écart entre enseignants0,240 · la distance entre les deux têtes enseignantes sur ce seul travail
Statut de validationscore_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découle

Classification

machine, non validée

Prédiction automatique; un appel candidat d’une seule source (Gemma direct ou Codex distillé), pas un consensus.

Devis d'étudeExpérimental (laboratoire)
Domainenon disponible
GenreJeu de données

Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».

En bref

Citations0
Publié2021
Routes d'admission1
Résumé présentoui

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