pysal/pysal: v24.07rc3

Overall, there were 463 commits that closed 259 issues since our last release on 2024-01-31. Changes by Package libpysal v4.12.0 #757: W to g guide #756: exposing mapping_distance in travel builder #233: [WIP] stop sorting ids by default #299: [WIP] remove Ids attribute #505: New changelog conventions #365: start on perimeter weighting with just pygeos #356: [WIP] initial draft of network weights #626: allow ids in graph when passing sparse #151: network weights #755: add graph from travel network #369: refactor examples #490: Logic for pushing tags to trigger release needs to be revisited #375: pygeos-based contiguity #733: W to g guide #754: DOC: move Graph from experimental to stable API #740: ENH: add xarray interface to Graph #753: make asymmetry computation in Graph summary optional #739: fix higher_order contiguity including lower order #738: BUG: higher_order(lower_order=True) not working in edge cases #742: ENH: add Graph.summary with s0, s1, s2 and similar properties to Graph #752: ENH: add index_pairs to Graph #746: BUG: fix categorical lag for custom index #743: BUG: fix handling of non-isolate self-weights of 0 and order preservation #751: adjust CI env name & add Graph to README #750: update README with mention of Graph #749: update CI env naming conventions #534: Weights sprint planning #444: Does release GHA work? #315: scikit-geometry? #747: ensure that Graph.repr fits to 80 characters #745: added examples to graph #744: test against intel & apple silicon #573: BUG: relative neighbourhood depends on the order of observations #736: [pre-commit.ci] pre-commit autoupdate #737: ENH: use representative_point instead of centroid in Graph plotting #735: Centroid or representative point in graph plotting #698: ENH: Graph IO to classic weights file formats #732: CI: do not xfail momepy in reverse checks #729: Use importlib to implement simport #731: CI: ignore spvcm, add osmnx to env, xfail stuff out of control in reverse dep testing #726: Use fixtures for test data that uses the network #728: DOC: Fix a couple Sphinx warnings #727: DOC: Remove unused mkdocs-jupyter dependency #725: COMPAT: ensure argsort output has a stable order in numpy 2 #724: [CI] precision failure on ubuntu-latest, ci/312-no-optional.yaml [2024-06-19] #723: COMPAT: fix numpy 2.0 incompatibility #722: Failure due to numpy 2.0 deprecation #721: inserted chicagoSDOH as sample data #720: ENH: pass kwargs to buffer in fuzzy_contiguity #695: import libpysal stuck on loading remote examples #718: Add timeout in request to handle off-line use cases in examples #719: COMPAT: remove typing from Graph.describe #716: Categorical spatial lag using the Graph #711: ENH: implement Graph.repr #717: ENH: include Graph.describe() to describe neighbourhood values #529: [DO NOT MERGE] Change to the new sparse arrays and see what breaks #715: PERF: sorting-related improvements in Graph #714: Refactor handling of coincident points in triangulation #713: Co-location issues with Graph triangulation builders #694: ENH: add Graph.build_h3 #667: Build Graph from H3 #710: PERF: don't build coincident lookup if not needed #709: BUG: misaligned weights in the gabriel graph #708: add back numba in Py312 tests #590: check when numba is ready for Python 3.12 #703: DOC: add examples to build_contiguity and build_triangulation #697: REF: minor performance improvements in Graph #704: Added examples to from_dicts and build_knn. #705: DOC: Add examples to build_distance_band #702: DOC: add examples to build_block_contiguity #701: DOC: add example to Graph.to_W #700: DOC: clarify the requirements of the canonical sorting of Graph index #687: Ensure Graph.sparse is robust enough #696: [pre-commit.ci] pre-commit autoupdate #693: Work around GEOS issue in voronoi_frames #691: REF: refactor Graph.to_W to avoid perf bottleneck #672: Graph.to_W is slow #692: COMPAT: compatibility with pandas 3 #678: ENH: geometry agnostic Voronoi based on shapely #665: Interest in Optimal Spatial Matching? #685: REF: remove usage of deprecated cascaded_union #686: TST: resolve FutureWarnings in graph apply tests #684: ImportError: cannot import name 'np' from 'libpysal.common' #683: Bump codecov/codecov-action from 3 to 4 pointpats v2.5.0 #140: update min supported Python and testing workflow #141: bump & sync min reqs [2024-06] #139: minimum support Python [2024-06] #138: fix typo in random.normal function #133: REF: reimplement mrr on top of shapely #136: localknox #137: Typo in random.normal method that results in errors #134: keep members of local knox hotspots spaghetti v1.7.6 #771: #770 -- doctests after full tests #770: doctests as separate action or workflow #769: update docstring tests -- numpy-2.0 failures #767: current CI failures [2024-06-19] #768: fix doctests in CI -- numpy 2.0 #765: [pre-commit.ci] pre-commit autoupdate #764: gpd & shp as hard reqs -- no optional testing -- #763 #763: 310-no-optional CI failures [2024-03-16] #762: 312-dev CI failures [2024-03-16] #761: Bump codecov/codecov-action from 3 to 4 momepy v0.7.2 #625: DOC: update user guide to avoid MultiIndex #631: DOC: update rest of the guide #628: DOC: User guide fixes for elements examples #626: REF: remove result_index attribute from describe_agg #627: REF: do not return building_id from generate_blocks #606: BUG: verify handling of MultiIndex #622: ENH: either support MultiIndex or raise an error when one is given #624: DOC: update docstrings to match numpy2 outputs #623: TYP: add type hints to the graph module #579: API: distinction between libpysal and networkx graphs #621: BUG: fix a case when there's only a single building to be passed to voronoi_frames #620: ENH: add mean_deviation #619: API: deprecate legacy API in favour of Graph-based functional implementation #612: API: deprecate legacy API #618: minor type hinting fix #617: API: allow silencing of FutureWarnings from legacy API #616: DOC: expose get_nearest_node, fix fmt #615: DOC: remaining examples in the new API #610: DOC: add examples #614: update precommit to ruff docs dir #613: DOC: ruff user guide #611: DOC: add first batch of examples + testing #609: Faster node density #608: BUG: fix describe_ function when count is not present #543: GHA: switch to autogenerated release notes #582: BUG/ENH: support custom enclosure index is in tessellation and GeoDataFrame as enclosure input #592: DOC: add citation.cff #544: DOC: update dev installation instructions #576: functional node_density implementation #575: functional reached calculations #572: functional courtyards calculation #570: ENH: describe as a replacement of AverageCharacter #566: ENH: street_alignment and get_nearest_street #559: ENH: refactor tessellation #557: ENH: add neighbors #556: ENH: mean_interbuilding_distance and building_adjacency #555: ENH: neighbor_distance using Graph and new API #554: ENH: add alignment to the new API #553: ENH: add orientation and shared_walls functional versions #600: ENH: add get_nearest_node #593: Street profile #590: ENH: adaptive buffer as a tessellation limit #589: Functional percentiles #588: Functional distribution #587: Functional dimension #586: Functional density #584: _describe API refactoring #583: Functional arearatio #581: Functional diversity #580: Functional blocks #607: Update release.yml - troubleshoot release action failure #604: gha for release notes - #543 #396: ENH: helper functions for geometry-based network simplification #461: TestDistribution.test_MeanInterbuildingDistance failure on dev #304: Add GitHub Action to build and push container #537: BUG: tessellation may produce overlapping polygons #261: EHN: Add SkyViewFactor #603: DOC: execute notebooks and ensure they're tested #264: ENH: Simple Building Volume Density #465: ENH: helper functions part 1 #562: test efficiency of graphblas in straightness #602: API: return morphological tessellation as a GeoDataFrame #601: DOC: create usable env on RTD, update clustering #599: DOC: User guide refresh #598: DOC: note on a precision issue in enclosed_tessellation #597: DOC: rework API docs around the new functional stuff #596: COMPAT: numpy 2.0 compatibility #585: Functional count #594: DEP: bump libpysal minimum to 4.11 #406: API: deprecation decorators for transition to functional API #317: Add citation.cff #310: ENH: refactor get_network_id based on sindex.nearest_all #359: Add osmnx_like keyword to gdf_to_nx #478: Enclosure function does not work correctly #525: Networkx deprecations #497: Resolve geopandas deprecations #577: more complete linting & formatting - docs & benchmarks #578: linting & formatting for benchmarks/* and docs/* spreg v1.5.0 #138: Minor adjustments to printouts and spatial impacts #136: Version 1.5 #137: Update unittests.yml -- manual trigger #130: Bump actions/github-script from 6 to 7 #131: Bump conda-incubator/setup-miniconda from 2 to 3 #133: Bump actions/cache from 3 to 4 #134: Bump codecov/codecov-action from 3 to 4 mapclassify v2.7.0 #211: WIP classify to rgba #216: plot histogram with class bins #221: [pre-commit.ci] pre-commit autoupdate #215: Add monthly downloads badge to README #217: doctest failures [2024-06-23] #220: CI: test against Python 3.12 #219: CI: doctest only on ubuntu latest #218: CI: ensure 3.9 envs are compatible #214: [CI] failing dev from libpysal.graph --> numpy.float_ #210: COMPAT: make greedy compatible with future #209: 311-dev CI failures [2024-04-01] #208: [pre-commit.ci] pre-commit autoupdate #207: 311-dev CI failures [2024-03-16] #206: Bump codecov/codecov-action from 3 to 4 <

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