MétaCan
Menu
← Back to cohort

Biochemical Analysis of Wsc1p and Mid2p Interacting Partners under Thermal Stress

2015· article· en· W1200675848 on OpenAlexaboutno aff
Ednalise Santiago, Luis M. Ruiz‐Pérez, Inoushka Mejías, José Rodríguez Medina

Bibliographic record

VenueThe FASEB Journal · 2015
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicFungal and yeast genetics research
Canadian institutionsnot available
FundersNational Institute of Allergy and Infectious DiseasesNational Institute of General Medical SciencesNational Institutes of HealthMohammed bin Rashid School of Government
KeywordsPhosphorylationInteractorSaccharomyces cerevisiaeMutantYeastCell biologySignal transductionWestern blotBiologyGeneChemistryMolecular biologyGenetics

Abstract

fetched live from OpenAlex

The PKC1 cell wall integrity pathway (CWIP) is essential for survival and maintenance of cell wall integrity in yeast cells. Upon exposure to cell wall stress, signaling proteins (sensors) in the plasma membrane activate this pathway by interacting with other signaling proteins (interactors). The objective of this research is to know if interactors previously identified by the integrated Membrane Yeast Two‐Hybrid (iMYTH) technique contribute to CWIP activation under thermal stress. Our hypothesis is that interactors of the Wsc1p and Mid2p stress sensors are required for survival to thermal stress. To test this hypothesis, strains bearing null mutations for genes encoding stress sensor proteins and their interacting protein partners were tested for CWIP activation at 37°C by Western Blot technique. The cells were exposed 1hr at 37°C during log phase and the protein extracts were tested with antibodies that measure CWIP activation through Slt2p phosphorylation. Most of the null mutants showed normal PKC1 activation when shifted from growth at 27°C to 37°C similar to a wild type strain. Deletion of GTT1 an interactor of Mid2p exhibited very high levels of Slt2p phosphorylation in both conditions relative to the wild type suggesting that PKC1 was being activated constitutively. In conclusion, interactors of Wsc1p and Mid2p can function as signaling proteins involved in PKC1 pathway regulation and may be associated with survival under different stresses. This research was supported by the UPR‐MSC, Univ. of Toronto, Univ. of Kentucky, NIGMS/NIAID‐SC1AI081658, NCRR‐RCMI‐G12MD007600, MBRS‐RISE‐R25GM061838, and NIH‐INBRE 8 P20 GM103475‐13.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.042
GPT teacher head0.337
Teacher spread0.294 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2015
Admission routes1
Has abstractyes

Explore more

Same venueThe FASEB Journal→Same topicFungal and yeast genetics research→French-language works237,207→