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Record W1443384835

Replication of mutant strains of oncolytic reovirus in different cell lines

2008· article· en· W1443384835 on OpenAlexaff
Guy Lemay

Bibliographic record

VenueCancer Research · 2008
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicVirus-based gene therapy research
Canadian institutionsUniversité de Montréal
Fundersnot available
KeywordsOncolytic virusBiologyInterferonMutantVirologyVirusProtein kinase RCell cultureViral replication3T3 cellsProteasesCellMolecular biologyTransfectionGeneCell cycleGeneticsEnzymeBiochemistry
DOInot available

Abstract

fetched live from OpenAlex

906 Murine NIH-3T3 cells are poorly infected by mammalian reovirus but support productive infection upon cell transformation by H-Ras(G12V), leading to the idea that reovirus could be used as an “oncolytic” virus. It was initially believed that the inhibition of cellular interferon-inducible RNA-dependent protein kinase, PKR, was responsible for increased permissivity of Ras-transformed cells to reovirus. Other data later suggested an enhanced uncoating of the virions, due to increased levels of lysosomal proteases in transformed cells. Literature data also indicate that Ras activation is neither sufficient nor necessary for productive reovirus infection, depending on the cell types. --- Additional studies are thus needed to better comprehend the cellular and viral factors that ultimately determine the ability of reovirus to productively infect “normal” and/or “transformed” cells. --- A mutant reovirus (P4L-12) was previously isolated in our laboratory, based on increased sensitivity of this virus to interferon and on its better ability to discriminate between parental and Ras-transformed NIH-3T3 cells. Another mutant (SC1-PV) was obtained from persistently-infected murine fibroblasts; this virus requires only low levels of proteases to be uncoated, compared to the wild type virus. Our recent sequencing data revealed that both mutant viruses exhibit amino acid substitutions in their σ3 protein. This is consistent with the known importance of σ3 in the virus’ ability to be uncoated, as well as accumulating evidence suggesting the central role of σ3 in determining reovirus’ susceptibility to PKR. Mutant and wild-type viruses were used to infect a panel of murine and human cell lines; viral titers were then determined by TCID50 and plaque assays. Interestingly, both mutant viruses can infect cell lines that are relatively resistant to the wild type virus due to inefficient uncoating in these cells. Furthermore, the infectivity of P4L-12 was either unaffected or even slightly decreased by prior chymotrypsin treatment, while infectivity of wild type and SC1-PV was increased, as judged by virus titer and viral plaque size. However, P4L-12 was strongly restricted in cells that produce and respond to interferon, and thus this virus does not form plaques on these cells. We also observed a correlation between the ability of a given cell line to form colonies in soft agar and its ability to support reovirus replication, rather than a correlation with the Ras activation status of the cells. --- Altogether, our data thus support the idea that cellular factors affecting reovirus replication are complex and linked to pathways leading to cellular transformation. We further suggest that viral strains should be chosen or manipulated to optimize their oncolytic potential. The σ3 protein appears as the most likely viral factor to be involved in modulating the virus’ ability to replicate in different normal or transformed cell types.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.098
GPT teacher head0.421
Teacher spread0.322 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2008
Admission routes1
Has abstractyes

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