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Intracellular p <scp>H</scp> Measurement

2015· other· en· W1481386561 on OpenAlexaff
Darpan Malhotra, Joseph R. Casey

Bibliographic record

VenueEncyclopedia of Life Sciences · 2015
Typeother
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicATP Synthase and ATPases Research
Canadian institutionsUniversity of Alberta
Fundersnot available
KeywordsIntracellularIntracellular pHCytosolBiophysicsFluorescenceChemistryBicarbonateBiochemistryBiologyEnzyme

Abstract

fetched live from OpenAlex

Abstract p H is a profound regulator of cellular function. It is, therefore, often important to assess intracellular p H . Given the small size of individual cells and their sensitivity to perturbation, measurement of intracellular p H requires sensitive, indirect measurement approaches. These include equilibration of weak acids/bases, nuclear magnetic resonance spectroscopy, p H microelectrodes, fluorescent p H indicator dyes and p H ‐sensitive fluorescent proteins. Presently, the use of fluorescence techniques predominates, as these permit sensitive detection and the possibility to discretely measure p H in different cellular compartments. The selection of intracellular p H measurement technique is guided by consideration of their strengths and weaknesses, in addition to technical considerations. Cells resist changes of p H through p H buffering molecules, including proteins and bicarbonate, which together are called the cell's buffer capacity. Key Concepts Cellular processes are highly sensitive to pH, so cells have redundant mechanisms to control their pH. Buffer capacity is the ability of cells to control pH by absorbing or releasing H + from chemical pH buffering molecules. Cell membranes contain embedded transport proteins able to move H + , or pH‐buffering HCO 3 − in order to tightly control cytosolic and organellar pH. pH of the cytosol and other intracellular compartments can be measured. Certain molecules will absorb light and release a photon of light at a longer wavelength, a process known as fluorescence. Fluorescent dyes and proteins are the most common means to report on intracellular pH.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Other · Consensus signal: Other
Teacher disagreement score0.014
Threshold uncertainty score0.741

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.034
GPT teacher head0.290
Teacher spread0.256 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations5
Published2015
Admission routes1
Has abstractyes

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