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Record W1500703353 · doi:10.1128/9781555817848.ch23

How Noninvasive Pathogens Induce Disease: Lessons from Enteropathogenic and Enterohemorrhagic <i>Escherichia Coli</i>

2014· book-chapter· en· W1500703353 on OpenAlexaff
Bruce A. Vallance, Crystal Ying Chan, B. Brett Finlay

Bibliographic record

VenueASM Press eBooks · 2014
Typebook-chapter
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicEscherichia coli research studies
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsEnteropathogenic Escherichia coliMicrobiologyBiologyVirulencePilusPathogenEscherichia coliVirologyGeneGenetics

Abstract

fetched live from OpenAlex

A novel focus of the work has been on defining the molecular and cellular mechanisms underlying the interactions between bacterial pathogens and host cells. During infection, enteropathogenic Escherichia coli (EPEC) and enterohemorrhagic E. coli (EHEC) induce a characteristic “attaching and effacing” (A/E) histopathology on gut enterocytes. Since studies investigating the function of EPEC's virulence factors are the most advanced, this chapter deals with EPEC as the prototype for the family of A/E-inducing pathogens. EPEC infection is estimated to cause the deaths of several hundred thousand children per year owing to dehydration and other complications. First widely recognized as the causative agent of hamburger disease, EHEC is a zoonotic pathogen that appears to be asymptomatically carried by various ruminants. Mutants lacking the bundle-forming pilus (BFP) plasmid still attach to host cells, but do not form microcolonies and produce fewer A/E lesions than wild-type EPEC. Immunofluorescence studies have shown that in addition to membrane-bound Tir, the tips of EPEC pedestals contain predominantly filamentous (F)-actin, as well as talin, α- actinin, ezrin, and several other cytoskeletal proteins. Diarrhea is undoubtedly the most prominent and widespread symptom associated with both EPEC and EHEC infection. Approaches using molecular biology, genetics, and cell biology have provided many new insights into how EPEC and related pathogens interact with and exploit host cells during the course of infection and how this ultimately leads to disease.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.000
Science and technology studies0.0000.002
Scholarly communication0.0020.003
Open science0.0010.001
Research integrity0.0020.004
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.026
GPT teacher head0.250
Teacher spread0.224 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2014
Admission routes1
Has abstractyes

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Same venueASM Press eBooksSame topicEscherichia coli research studiesFrench-language works237,207