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Effects of amino acid intake level in pregnant pigs on plasma metabolome (643.3)

2014· article· en· W1505547912 on OpenAlexafffundabout
Soenke Moehn, Ramanarayan Krishnamurthy, Philip L.‐F. Liu, Souhaila Bouatra, David S. Wishart, Paul B. Pencharz, Ronald O. Ball, Graham Plastow

Bibliographic record

VenueThe FASEB Journal · 2014
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic and phenotypic traits in livestock
Canadian institutionsHospital for Sick ChildrenUniversity of Alberta
FundersAlberta Livestock and Meat Agency
KeywordsMetabolomeMetabolomicsMetaboliteChemistryAmino acidEndocrinologyInternal medicineBiologyBiochemistryChromatographyMedicine

Abstract

fetched live from OpenAlex

The objective of this study was to determine commonalities and differences in the metabolome in non‐pregnant pigs and in early (EG), late (LG) and entire pregnancy during the study of amino acid (AA) requirements. Each pig was fed 6 levels of test AA at maintenance and in both EG and LG. The metabolome of 331 plasma samples from 19 sows in their 2nd to 4th parity was analyzed by nuclear magnetic resonance, gas chromatography‐mass spectroscopy (MS) and direct injection MS. Data were evaluated using partial least square‐discriminant analysis (PLS‐DA) in www.metaboanalyst.ca . Across AA tested, AA limitation affected (P<0.05) the metabolome at maintenance and in EG but not in LG. The AA level, across AA tested, was only significant in EG (P=0.01). For AA level, only urea was an important feature in maintenance, EG and LG. There were no common metabolites for AA limitation. The AA tested (Thr, Ile, Lys, Trp) affected (P<0.001) the metabolome at maintenance and in the entire pregnancy, EG and LG. Within AA tested, no significant results were found for Ile and Trp because of fewer observations (<40). The stage of pregnancy affected (P<0.05) the metabolome when studying Thr or Lys. In EG and LG, threonine and aminoadipate were the only common features for Thr and Lys, respectively. For Lys, AA limitation affected (P=0.036) the metabolome in EG but not in LG. For Thr, AA level affected (P=0.029) the metabolome in LG but not in EG. In this study, PLS‐DA could not identify common key metabolites for different AA and status of pregnancy. Metabolomics to determine key metabolites for the effect of AA intake needs to be applied within AA tested and within stage of pregnancy in pigs. Grant Funding Source : Alberta Livestock and Meat Agency

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.226
Teacher spread0.212 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2014
Admission routes3
Has abstractyes

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