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Record W1506150987

Analysis on Association between Molecular Evolution of Human GJB2 Gene and Hereditary Effect with Deafness

2012· article· en· W1506150987 on OpenAlexvenueno aff
Yi Fan, Anzhu Yu, Yun Yu, Xin-Huan Han, Guangqian Xing, Xin Cao

Bibliographic record

VenueInternational Journal of Molecular Medical Science · 2012
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicConnexins and lens biology
Canadian institutionsnot available
Fundersnot available
KeywordsGeneGeneticsMutationPhylogenetic treeTransmembrane domainBiologyAmino acidTransmembrane protein
DOInot available

Abstract

fetched live from OpenAlex

Gap junction protein β2 ( GJB2 ) gene mutations are associated with the hereditary non-syndromic hearing loss. With their wide mutation types and specifically high frequent mutations, it was considered to be a unique deafness gene. In this research, GJB2 proteins were systematically studied with the means of Bioinformatics including molecular phylogeny, conservation, transmembrane region, three-dimensional structure and missence mutations analysis, combined with reported experimental results. 166 fixed amino acid sites, 2 non-conservative regions and 2 conservative sites of spatial structure were predicted. Association analysis results demonstrated that the mutations in conservative site were more likely to be pathogenic; the frequency of mutation sites in non-conservative regions was smaller than conservative regions; a mutation in transmembrane region changing the amino acid's property presumably affects GJB2 protein spatial structure and thus would alter the member channel's permeability. This paper provides a theoretical basis for further study of the relationship between GJB2 gene mutations and deafness, and it also may have the reference value for other diseases' research.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.047
Threshold uncertainty score0.281

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.282
Teacher spread0.277 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2012
Admission routes1
Has abstractyes

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