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Record W1518327794

Proteolytic cascades of human tissue kallikreins

2006· article· en· W1518327794 on OpenAlexaff
Nashmil Emami, Iacovos P. Michael, Eleftherios P. Diamandis

Bibliographic record

VenueCancer Research · 2006
Typearticle
Languageen
FieldMedicine
TopicCoagulation, Bradykinin, Polyphosphates, and Angioedema
Canadian institutionsMount Sinai Hospital
Fundersnot available
KeywordsProteasesKallikreinProteolytic enzymesProteolysisBiologyCell biologyTrypsinProteaseBiochemistryChemistryEnzyme
DOInot available

Abstract

fetched live from OpenAlex

4368 Proteases are a family of enzymes responsible for hydrolysis of peptide bonds and protein disassembly. Understanding impaired activation pathways of proteases, particularly through proteolytic cascades, has been the center of extensive cancer research in the past few years. It is now evident that perturbed protease activity directly contributes to tumorogenesis and metastasis via aberrant extracellular matrix (ECM) remodeling, as well as, targeting non-ECM proteins of tumor microenvironment. The human tissue kallikrein (hK) family is a subgroup of secreted serine proteases, comprised of fifteen members. There is accumulating evidence that expression and proteolytic activity of various members of the hK family are dysregulated in a wide range of tumors, including ovarian, breast, and prostate cancers. Recent findings suggest that, analogous to other proteases, hKs exert their physiologic and pathologic functions through highly regulated proteolytic cascades. For instance, hK5 was shown to be autoactivated and sequentially activating hK7 in stratum corneum (SC) layer of skin. Similarly, hK2 was reported to activate hK3 in seminal plasma. Moreover, various hKs are known to be co-expressed and are coordinately up- or down- regulated in various cancer cell lines and/or tissues. Furthermore, inactive pro-hKs are activated by cleavage at their trypsin-like cleavage motifs, suggesting activation of chymotrypsin-like by trypsin-like hKs. To elucidate proteolytic cascades involved in activation of hKs, synthetic heptapeptides representing the activation sites of the fifteen hKs were designed. The ability of the active recombinant hKs to cleave the heptapeptides was examined by reversed phase HPLC. Cleavage efficiency was quantified as a time-dependent percent reduction of the peak representing uncleaved heptapeptide. Synthetic peptides representing the two cleaved fragments of each heptapeptide were used as controls to eliminate peak reduction due to non-specific degradation. We confirmed previously reported hK3 and hK7 cleavage by hK2 and hK5, respectively. In addition, we demonstrated possible activation of hKs 1-3, 5,7,8,9, and 11 by both hK5 and hK2. hK5 cleaves additional heptapeptides representing hKs 8 and 15. Activation of pro-hK3 was further confirmed using the hK3-specific flourogenic substrate, AAPF-AMC. Interestingly, we observed that excess pro- hK2 and hK3 are internally cleaved and deactivated in a dose-dependent manner by active hK5. Analogous to many other proteases, hK5 seems to be bidirectionally involved in the regulation of certain hK proteolytic cascades. experiments to elucidate the dynamic process of hK proteolytic cascades and their complex tumor-associated dysregulation are ongoing. Therapeutic manipulation of hK regulatory pathways can supplement the current clinical treatments of certain carcinomas.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.090
GPT teacher head0.443
Teacher spread0.354 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2006
Admission routes1
Has abstractyes

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