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Record W152648670

A Methodology for Encoding Problem Lists with SNOMED CT in General Practice.

2008· article· en· W152648670 on OpenAlexaff
Francis Lau, Raymond Simkus, Dennis Lee

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBiomedical Text Mining and Ontologies
Canadian institutionsUniversity of Victoria
Fundersnot available
KeywordsSNOMED CTTerminologyComputer scienceMatching (statistics)General practiceEncoding (memory)Artificial intelligenceNatural language processingInformation retrievalMedicineLinguistics
DOInot available

Abstract

fetched live from OpenAlex

This paper describes a methodology for encoding problem lists used in general practice with SNOMED CT. Our intent is to help general practitioners to incorporate SNOMED CT into their existing Electronic Medical Record (EMR) systems with minimal disruption as a first step, thus allowing them to assess its impact prior to full-scale conversion. We started with 1,713 original unique terms that made up the problem lists from the general practice EMR used in the study. We ended with 1,468 unique concepts after two cycles of matching and revisions that led to 1,347 or ~92% successful matches. The remaining terms were revised to tease out modifiers or secondary concepts that could be used to provide equivalency through post-coordination. While skeptics of reference terminology systems often balk at their unwieldy size and complexity for local adoption, this study has demonstrated that, using our methodology, it is possible to create a manageable subset of SNOMED concepts for problem lists used in general practice with immediate tangible value.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.750
Threshold uncertainty score0.329

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.088
GPT teacher head0.353
Teacher spread0.265 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations9
Published2008
Admission routes1
Has abstractyes

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