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Record W1570874243 · doi:10.1002/9780470048672.wecb407

Nucleic Acids: Hydration

2008· other· en· W1570874243 on OpenAlexaff
Tigran V. Chalikian, Jens Völker

Bibliographic record

VenueWiley Encyclopedia of Chemical Biology · 2008
Typeother
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicDNA and Nucleic Acid Chemistry
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsNucleic acidDNANucleic acid structureChemistryRNABiophysicsBiochemistryBiologyGene

Abstract

fetched live from OpenAlex

Abstract Water is an integral part of DNA structure, and it plays an important role in dictating conformational preferences and binding properties of nucleic acids. Although in recent years a wealth of information on the physical properties of water in the vicinity of nucleic acids has accumulated, our understanding of how water interacts with nucleic acids and how it mediates DNA recognition by small ligands and DNA‐binding proteins remains limited. In this article, we review the current state of DNA hydration research. In particular, we discuss structural, dynamic, and thermodynamic aspects of nucleic acid hydration. We also present an overview of the structural and thermodynamic role of water in modulating protein–DNA recognition and highlight the importance of hydration as a major contributor to the energetics of nucleic acid recognition. We emphasize the need for additional physico‐chemical studies of DNA hydration by experimental and theoretic scientists.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Research integrity
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Other · Consensus signal: Other
Teacher disagreement score0.281
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.222
Teacher spread0.217 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2008
Admission routes1
Has abstractyes

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