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Record W1578311793 · doi:10.1186/ar1408

Analysis of IgVH-specific, CXCR4-specific and CXR5-specific mRNA transcripts in individual peripheral blood B cells of patients with primary Sjögren's syndrome and normal healthy subjects

2004· article· en· W1578311793 on OpenAlexfundno aff
Arne Hansen, Karin Reiter, Mirko Gosemann, Till Ziprian, PE Lipsky, Thomas Dörner

Bibliographic record

VenueArthritis Research · 2004
Typearticle
Languageen
FieldMedicine
TopicSalivary Gland Disorders and Functions
Canadian institutionsnot available
FundersCanadian Arthritis NetworkSchool of Medicine, University of California, San DiegoMenzies Institute for Medical ResearchNational Cancer InstituteArthritis SocietyUniversity of North Carolina at Chapel HillGenentechNational Institutes of HealthBiogenLupus Research InstitutePfizerNatural Sciences and Engineering Research Council of CanadaDutch Arthritis AssociationOesterreichische NationalbankDeutsche ForschungsgemeinschaftNuffield FoundationPhysiotherapy Foundation of CanadaCanadian Institutes of Health ResearchNational Institute of Arthritis and Musculoskeletal and Skin DiseasesLupus Research AllianceWellcome TrustNewcastle UniversityNational Institute of Allergy and Infectious DiseasesHoward Hughes Medical InstituteAustrian Science FundArthritis Foundation
KeywordsComputer science

Abstract

fetched live from OpenAlex

Disturbances in peripheral B-cell homeostasis have been found to be characteristic of primary Sjögren's syndrome (pSS). Abnormal chemokine receptor expression has been proposed to be involved in the pathogenesis of autoimmune diseases. This study aimed to further delineate disturbances in peripheral CD27 naive and CD27 memory B cells and their expression of chemokine receptors in pSS. Isotype-specific immunoglobulin heavy chain (IgH) transcripts as well as chemokine receptor (CXCR4 and CXCR5) specific mRNA transcripts were analyzed in single-sorted CD19 D27 naïve and CD19 CD27 memory B cells from pSS patients and normal healthy subjects (NHS). A significantly higher frequency of B cells coexpressing μ, α, and/or γ chain transcripts were found in pSS patients compared with controls (58.0% versus 14.3%, P < 0.0001). Contrasting the findings in NHS, peripheral memory B cells in pSS patients were characterized by heavily mutated IgV H transcripts (mutational frequency, 8.6% versus 4.4%; P < 0.0001). Notably, this included significantly enhanced mutational frequencies of Cμ-transcripts (9.6% in pSS versus 2.5% in NHS, P < 0.0001). A CD27 memory-type B-cell subpopulation expressing mutated Cμ-transcripts was exclusively found in pSS patients. Moreover, a significantly enhanced frequency of CXCR4-mRNA-positive CD27 naive B cells was found in pSS patients when compared with NHS (36.0% versus 18.1%, P < 0.0001). Altogether, B-cell hyperactivity and abnormalities in peripheral B-cell memory are characteristic of patients with pSS. Differential expression of chemokine receptors appear to be involved in disturbances of peripheral B-cell homoestasis in pSS.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.019
Threshold uncertainty score0.736

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.002
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.268
Teacher spread0.239 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2004
Admission routes1
Has abstractyes

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