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Record W1590709745 · doi:10.1113/jp270290

David Yue (1957–2014)

2015· article· en· W1590709745 on OpenAlexaff
Wayne R. Giles, Gerald W. Zamponi

Bibliographic record

VenueThe Journal of Physiology · 2015
Typearticle
Languageen
FieldNeuroscience
TopicPhotoreceptor and optogenetics research
Canadian institutionsUniversity of Calgary
Fundersnot available
KeywordsSympathyPhysiologyNeuroscienceMedicinePsychology

Abstract

fetched live from OpenAlex

Dr David Yue died suddenly and tragically in his laboratory on 23 December 2014. We write as his friends and colleagues to express our deepest sympathy to his family, while acknowledging his stellar accomplishments as a scientist, teacher, mentor and programme leader. Dr Yue studied for his undergraduate degree in Biochemistry at Harvard College and then earned an MD and PhD from Johns Hopkins University. As a Faculty member in Bioengineering and Neurosciences at Johns Hopkins University, Dr Yue earned an international reputation as one of the world's most innovative and accomplished cellular and molecular physiologists/biophysicists/bioengineers. The consistent and very important goal of his work was to obtain an understanding of the molecular details of key aspects of Ca2+ fluxes and [Ca2+]i homeostasis in mammalian cells, and thus discover fundamental physiological mechanisms. Some of his early work was done on cardiac muscle, using a combination of experimental protocols and bioengineering approaches to measure [Ca2+]i and force production. This work resulted in an improved and novel understanding of the relationship between [Ca2+]i and active force generation that governs the mechanical properties of the mammalian ventricle. Later, Dr Yue's major scientific focus was on the molecular physiology, biophysics and pharmacology of selected Ca2+ channels, with an emphasis on molecular mechanisms and their modulation by calmodulin. An excellent series of papers over a 15 year period collectively stand out as being one of the most innovative, creative and rigorous bodies of work done by any cell physiology laboratory worldwide. This was recognized when Dr. Yue received the prestigious Kenneth Cole Award from the Biophysical Society in 2011. The Yue laboratory was the first to draw attention to the fact that the C-terminal segment of the L-type Ca2+ channel can itself significantly modulate Ca2+ channel function. In addition, a clever and complex combination and application of electrophysiological principles, optical techniques and applied mathematics allowed the Yue group significantly to advance the understanding of the functional role of calmodulin in mammalian cells. In these studies, Dr Yue and his trainees identified and then demonstrated key aspects of Ca2+ signalling in mechanistic detail. They found that there are two very different functional roles for two molecular domains on the calmodulin molecule. One module senses Ca2+ and regulates downstream signalling using a signal transmission mode that, by analogy to a stereo system, would be considered frequency modulated. In contrast, a second lobe of the same molecule operates mainly as an amplitude sensor. In combination, these two calmodulin-based signals explain essential aspects of short-term and long-term regulation by Ca2+ of fundamental neurophysiological processes, such as long-term potentiation and depression, and transcriptional regulation. In addition to these remarkable, in fact unique, scientific contributions, Dr David Yue was well known and much respected as a mentor of graduate students and postdoctoral fellows and as a commi-tted and exceptionally effective teacher. Both his students and his Faculty colleagues rank his commitment to and effectiveness in teaching, mentoring and programme development as being equal to his very impressive scientific record. Many of the papers in this supplemental issue of The Journal of Physiology are based on or relate importantly to fundamental mechanisms for regulation of intracellular Na+ and Ca2+ in the mammalian heart. These physiological principles and resulting pathophysiological sequelae, e.g. ventricular arrhythmias, relate closely to some of the most recent work from the Yue laboratory (Ben-Johny et al. 2014; Ben-Johny & Yue, 2014). Indeed, David Yue and his colleagues were very well positioned to make further significant advances concerning Ca2+- and calmodulin-mediated mechanisms of cardiac arrhythmias (Limpitikul et al. 2014; Park et al. 2014). David Yue was an exceptional scientist and academic leader. The untimely interruption of his extremely productive and impactful career leaves a very significant void in fields such as cellular and molecular physiology. We recognize, however, that the most tragic aspect of the passing of David Yue is the loss of this committed father, husband and mentor.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.006
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Other · Consensus signal: none
Teacher disagreement score0.100
Threshold uncertainty score0.333

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.006
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0020.002
Open science0.0010.002
Research integrity0.0030.003
Insufficient payload (model declined to judge)0.1000.063

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.108
GPT teacher head0.362
Teacher spread0.254 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2015
Admission routes1
Has abstractyes

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