MétaCan
Menu
← Back to cohort

iNKT cell development is modulated by TCR avidity (LYM7P.728)

2014· article· en· W1598209928 on OpenAlexaff
Thierry Mallevaey

Bibliographic record

VenueThe Journal of Immunology · 2014
Typearticle
Languageen
FieldImmunology and Microbiology
TopicImmune Cell Function and Interaction
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsT-cell receptorCD1DAvidityBiologyImmunologyT cellCell biologyImmune systemInnate immune systemAntigen

Abstract

fetched live from OpenAlex

Abstract Invariant Natural Killer T (iNKT) cells are versatile innate T cells that influence immune responses associated with infection, cancer, inflammation and autoimmunity, notably through the production of a wide array of cytokines and chemokines. iNKT cells respond to lipid antigens presented by the MHC Class Ib molecule CD1d. iNKT T cell receptors (TCRs) have limited diversity, due to exclusive usage of a canonical Vα14-Jα18 TCRα chain and a limited set of TCR Vβ gene segments, but with extensive CDR3β diversity. Recent structural and mutational studies revealed that CD1d-lipid-TCR interactions differ markedly from classical pMHC-TCR interactions. Remarkably, docking onto CD1d-lipid complexes is unaffected by the nature of the lipid involved, nor TCRβ composition (Vβ gene segment usage or CDR3β diversity). Rather, we and others have demonstrated that TCRβ composition modulates TCR avidity for CD1d-lipids. Here, we have generated TCR retrogenic mice using TCRs with various avidities, and found a strong correlation between the frequency and numbers of iNKT cells that develop in vivo and TCR avidity for CD1d-lipids. In addition, TCR strength impacts on iNKT cell maturation as well as cytokine production upon immunization with the prototypical lipid αGalCer. In summary, our results highlight a crucial role for iNKT TCR strength on the selection and functional programing of iNKT cells.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.205
Teacher spread0.197 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2014
Admission routes1
Has abstractyes

Explore more

Same venueThe Journal of Immunology→Same topicImmune Cell Function and Interaction→French-language works237,207→