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PDE6s generate cGMP microdomains in native endothelial cells

2013· article· en· W162520140 on OpenAlexafffund
Alexandre Blanchette, Fanny Toussaint, Chimène Charbel, Philippe Comtois, Jonathan Ledoux

Bibliographic record

VenueThe FASEB Journal · 2013
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPhosphodiesterase function and regulation
Canadian institutionsUniversité de MontréalMontreal Heart Institute
FundersFonds de Recherche du Québec - SantéNatural Sciences and Engineering Research Council of CanadaHeart and Stroke Foundation of Canada
KeywordsCell biologyPhosphodiesteraseImmunostainingPhosphodiesterase 3PDE10ASecond messenger systemCyclic guanosine monophosphateEndothelial stem cellChemistryBiologyCytoplasmBiochemistryIn vitroEndocrinologyIntracellularImmunologyImmunohistochemistryEnzyme

Abstract

fetched live from OpenAlex

Cyclic GMP (cGMP) is a key messenger for cellular functions including ion channel regulation and gene expression. Nucleotides microdomains have a significant impact on cellular function. Phosphodiesterases (PDEs) play a prime role in the regulation of these functions through hydrolysis of cGMP and thus regulation of cGMP levels. Endothelial PDEs were studied for their impact on local cGMP levels. PDE5 and PDE9 are cGMP‐specific PDEs expressed in endothelial cells. Interestingly, the retina‐confined PDE6 have also been found in freshly isolated native endothelial cells by qPCR and immunostaining. Although PDE5 and PDE6γ are homogeneously distributed, PDE6α and PDE6β are mainly found in the perinuclear region. While PDE6β forms a continuous ring, PDE6α are distributed in clusters within the same region. Mathematical modeling revealed the dissimilar role of PDE5 and PDE6s in the spatial regulation of local cGMP following a bolus of NO. The presence of PDE6s near the nucleus suggests a potential role in the regulation of transcription factors. Therefore, endothelial PDEs and more specifically PDE6, might play a significant role in the control of cGMP‐mediated cellular functions through the fine‐tuning of cGMP microdomains. Supported by FRQS, HSFC and NSERC.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.233

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.213
Teacher spread0.205 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes2
Has abstractyes

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