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Record W1645693300 · doi:10.22092/jsb.2013.1726

Identification of molecular markers linked to sugarbeet cyst nematode resistance gene(s)

2013· article· en· W1645693300 on OpenAlexaff
Nanik Rahmani, M Mesbah, Peyman Norouzi

Bibliographic record

VenueDOAJ (DOAJ: Directory of Open Access Journals) · 2013
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicNematode management and characterization studies
Canadian institutions123 Certification (Canada)
Fundersnot available
KeywordsHeterodera schachtiiBiologyDNAGeneNematodeMolecular biologyGeneticsSoybean cyst nematodeEcology

Abstract

fetched live from OpenAlex

Beet cyst nematode (Heterodera schachtii Schmidt). Spreads extensively in different regions of sugar beet cultivation, and therefore many efforts are accomplished to prevent decrease of sugar and root yield caused by the disease. The most appropriate control method of this disease is improvement of resistant varieties. Wild species of procumbentes in Beta are very important because they contain resistance genes against different diseases including beet cyst nematode. Ten-mer primers and specific sequences were selected to identify DNA molecular markers linked to beet cyst nematode resistance genes. For this purpose, at first, segregating populations for resistance genes were selected and after seed sowing in pots in greenhouse, seedlings were inoculated with 1000 nematode larva several times. Resistant plants (with lower than 10 cysts) and susceptible plants (with less than 10 cysts) were identified and divided to two groups. In the next step, RAPD-PCR, finger printing of the samples and comparison the DNA banding pattern of the two groups was done by using selected primers such as: OP-X-02, OP-X-15, OP-G-02, OP-D-13, OP-B-11, OP-Y-10 and Sat-121 specific primers and the oligonncleotides TGAACACCTTTCAAAT (forward) and CGTAAGAGACTATGA (Reverse) and one hundred primers from the operon kits. After calculating of correlation between resistance plants and the presence of special DNA band, OP-D-13 and Sat-121 molecular markers were identified to be linked to resistant genes against beet cyst nematode. In conclusion, these two molecular markers can be used for screening of resistant plants in laboratory conditions.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.125
GPT teacher head0.452
Teacher spread0.327 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes1
Has abstractyes

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