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Record W1668437304 · doi:10.1196/annals.1419.004

<i>Microbiology to Help Solve Our Energy Needs</i>

2008· article· en· W1668437304 on OpenAlexafffund
Alexander Grigorʼyan, Gerrit Voordouw

Bibliographic record

VenueAnnals of the New York Academy of Sciences · 2008
Typearticle
Languageen
FieldEngineering
TopicHydrocarbon exploration and reservoir analysis
Canadian institutionsUniversity of Calgary
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsNitrateEnvironmental chemistryChemistryFossil fuelSulfurSulfideSulfateSulfate-reducing bacteriaMethaneEnvironmental scienceOrganic chemistry

Abstract

fetched live from OpenAlex

Our society depends greatly on fossil fuels, and the environmental consequences of this are well known and include significant increases of the CO(2) concentration in the earth's atmosphere. Although microbiology has traditionally played only a minor role in fossil-fuel extraction, two novel key discoveries indicate that this may change. First, the realization that oil components can be converted to methane and CO(2) by methanogenic consortia in the absence of electron acceptors (oxygen, nitrate, sulfate) explains how much of the world's oil has been biodegraded in situ. In addition to inorganic nutrients, only water is needed for these methanogenic conversions. Hence, continued methanogenic biodegradation may have shaped the heavy-oil reservoirs that are so prevalent today. The potential to exploit these reactions, for example, by in situ gasification, is currently being actively investigated. Second, injection of nitrate in oil and gas fields can lower sulfide concentrations. High sulfide concentrations, caused by the action of sulfate-reducing bacteria (SRB), are associated with increased risk of corrosion, reservoir plugging (through precipitated sulfides), and human safety. Nitrate injection into an oil field stimulates subsurface heterotrophic nitrate-reducing bacteria (hNRB) and nitrate-reducing, sulfide-oxidizing bacteria (NR-SOB). Nitrite, formed by these NRB by partial reduction of nitrate, is a strong and specific SRB inhibitor. Nitrate injection has, therefore, promise in positively controlling the oil-field sulfur cycle. There is now more interest in and potential to apply petroleum microbiology than there has been in the past, allowing microbiologists to contribute to a sustainable energy future.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Commentary · Consensus signal: none
Teacher disagreement score0.039
Threshold uncertainty score0.130

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0020.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0010.002
Scholarly communication0.0060.003
Open science0.0020.003
Research integrity0.0040.004
Insufficient payload (model declined to judge)0.0390.056

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.067
GPT teacher head0.286
Teacher spread0.218 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreCommentary

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations40
Published2008
Admission routes2
Has abstractyes

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