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Discovery and characterization of an essential <i>Francisella tularensis</i> protein required for tularemia disease development (538.5)

2014· article· en· W1793869219 on OpenAlexaff
K.Y. Lo, Shyanne Visram, Julian A. Guttman

Bibliographic record

VenueThe FASEB Journal · 2014
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBacillus and Francisella bacterial research
Canadian institutionsSimon Fraser University
Fundersnot available
KeywordsTularemiaFrancisella tularensisBiologyMicrobiologyFrancisellaVacuoleVirulenceBacteriaVirologyGeneCell biologyGenetics

Abstract

fetched live from OpenAlex

Potential bioterrorism agent Francisella tularensis subspecies tularensis ( F. tularensis ) causes tularemia; a disease that can cause up to 60% mortality. An essential step to developing tularemia is the ability of F. tularensis to escape the vacuole that it initially occupies to replicate in the cytosol of epithelial cells. We hypothesize F. tularensis possesses virulence factors (VFs) that facilitate this process. In this study, we identified a crucial VF for tularemia development. To identify this VF, we screened a 3,050 Francisella mutant library for microbes deficient in bacterial replication once inside host cells. By using subsequent bioinformatics analysis we identified proteins in a subset of mutated bacteria that fit traits of VFs and we tested their ability to cause tularemia‐induced death in mice. Mice infected with bacteria inactivated in 1 novel gene appeared uninfected whereas wild‐type infected mice died within 2 days. Electron and immunofluorescence micrographs of infected hepatocytes showed that this gene aids the bacteria in exiting lysosome‐associated membrane protein‐1 (LAMP‐1) positive membrane vacuoles leading to bacterial replication in the cytosol. Our findings demonstrate this novel VF enables F. tularensis to escape into the cytosol and ultimately cause disease.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.237
Teacher spread0.228 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2014
Admission routes1
Has abstractyes

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