Algorithms for the Hard Pre-Image Problem of String Kernels and the General Problem of String Prediction
Why this work is in the frame
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Bibliographic record
Abstract
We address the pre-image problem encountered in structured output prediction and the one of finding a string maximizing the prediction function of various kernel-based classifiers and regressors. We demonstrate that these problems reduce to a common combinatorial problem valid for many string kernels. For this problem, we propose an upper bound on the prediction function which has low computational complexity and which can be used in a branch and bound search algorithm to obtain optimal solutions. We also show that for many string kernels, the complexity of the problem increases significantly when the kernel is normalized. On the optical word recognition task, the exact solution of the pre-image problem is shown to significantly improve the prediction accuracy in comparison with an approximation found by the best known heuristic. On the task of finding a string maximizing the prediction function of kernel-based classifiers and regressors, we highlight that existing methods can be biased toward long strings that contain many repeated symbols. We demonstrate that this bias is removed when using normalized kernels. Finally, we present results for the discovery of lead compounds in drug discovery. The source code can be found at https://github.com/a-ro/preimage.
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Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it