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Record W1876577048 · doi:10.1043/02-18.1

Phylogeny and Biogeography of Erythronium (Liliaceae) Inferred from Chloroplast matK and Nuclear rDNA ITS Sequences

2009· article· en· W1876577048 on OpenAlexaff
Geraldine A. Allen, Pamela S. Soltis

Bibliographic record

VenueBioOne Complete (BioOne) · 2009
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Diversity and Evolution
Canadian institutionsUniversity of Victoria
Fundersnot available
KeywordsBiologyMonophylyCladeBiogeographyInternal transcribed spacerMolecular phylogeneticsEvolutionary biologyPhylogenetic treeBotanyZoologyEcologyGenetics

Abstract

fetched live from OpenAlex

Abstract We investigated phylogenetic relationships within Erythronium using DNA sequences from the chloroplast gene matK and the internal transcribed spacer (ITS) of nuclear ribosomal DNA. Erythronium, Amana, and Tulipa form a strongly supported clade that appears to be of Asian origin. Erythronium is widely distributed in the Northern Hemisphere, and consists of three well supported and geographically distinct clades occurring in western North America, eastern North America, and Eurasia. ITS analyses suggest that the Eurasian and eastern North American clades form a monophyletic group that separated into two lineages following divergence from the western North American clade. Although the three clades are each characterized by distinct morphological features, convergence both among and within geographic areas is seen in several characters. The western North American clade exhibits greater morphological and molecular diversity than either of the other two clades, and many of its species hybridize, suggesting both recent and ongoing speciation. The geographic distribution of Erythronium suggests initial diversification in Tertiary mixed mesophytic forest, followed by fragmentation of the range during the late Tertiary or early Pleistocene and subsequent radiation in western North America.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.181
GPT teacher head0.195
Teacher spread0.014 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations47
Published2009
Admission routes1
Has abstractyes

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