Molecular systematics of the South American rodent <i>Calomys</i><i> laucha</i> (Cricetidae: Sigmodontinae), a reservoir of the Laguna Negra hantavirus
Bibliographic record
Abstract
The small vesper mouse (Calomys laucha (Fischer, 1814)) (Cricetidae: Sigmodontinae) ranges widely in Brazil, Uruguay, Paraguay, Argentina, and Bolivia. The species is the reservoir of the Laguna Negra hantavirus (LNV) in Paraguay but not in Argentina, where it is one of the most abundant rodents in agro-pastoral ecosystems. To answer the question if the nominal species C. laucha constitutes a single genetic unit or if it presents genetic discontinuities that may relate to hosting LNV, we sequenced the cytochrome b (cyt b) gene of specimens from throughout the range of the distribution of the species. Phylogenetic analyses revealed two well-supported clades. Twenty-two sequences from Argentina, Paraguay, and Bolivia grouped in clade A, but three sequences from Uruguay and Brazil clustered in a quite divergent clade B. The genetic distance between the two groups is 5.75%. No significant differences between Argentinean, Paraguayan, and Bolivian specimens assigned to C. laucha were detected. The restricted distribution of LNV associated to C. laucha in central Paraguay could be explained by a “natural nidality” phenomenon.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.001 | 0.001 |
| Science and technology studies | 0.000 | 0.001 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".