MétaCan
Menu
Back to cohort
Record W1946690017 · doi:10.5376/cmb.2014.04.0006

Phylogeny in Few Species of Leguminosae Family Based on <i>matK</i> Sequence

2014· article· en· W1946690017 on OpenAlexvenueno aff
Sagar Patel, Dipti Shah

Bibliographic record

VenueComputational Molecular Biology · 2014
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicEthnobotanical and Medicinal Plants Studies
Canadian institutionsnot available
Fundersnot available
KeywordsPhylogeneticsSequence (biology)BiologyEvolutionary biologyComputational biologyGeneticsGene

Abstract

fetched live from OpenAlex

In this paper, few species of Leguminosae family considered for phylogenetically analyses which are found in Gujarat state in India and matK gene sequence data from NCBI database are considered for evolutionary analysis. The sequence data of the matK gene are more accurate than rbcL sequence data in the reconstruction of phylogenies throughout the seed plants. Leguminosae family is one of the largest families that contain thousands of species of Plants, Herbs, Shrubs and Trees worldwide. This study shows that species of Leguminosae family which is further classified into Fabaceae (Papilionaceae), Mimosaceae and Caesalpiniaceae; based on morphological characters has different members and the based on the DNA and protein matK sequence data analysis, few species are not related with each other as per morphological classification. We conclude that few species are related with each other as per botanical or morphological classification of Leguminosae family but evolutionary results shows that based on DNA and protein matK sequence data some species are not related with morphological or taxonomical classification.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.002
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.258
Teacher spread0.229 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2014
Admission routes1
Has abstractyes

Explore more

Same venueComputational Molecular BiologySame topicEthnobotanical and Medicinal Plants StudiesFrench-language works237,207