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Record W1967124414 · doi:10.1074/jbc.m112.434266

Proton Sensors in the Pore Domain of the Cardiac Voltage-gated Sodium Channel

2013· article· en· W1967124414 on OpenAlexafffund
Colin H. Peters, Charlene R. Allard, Tom W. Claydon, Peter C. Ruben

Bibliographic record

VenueJournal of Biological Chemistry · 2013
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicIon channel regulation and function
Canadian institutionsSimon Fraser University
FundersMichael Smith Health Research BCHeart and Stroke Foundation of Canada
KeywordsSodium channelXenopusChemistryBiophysicsProtonGene isoformExtracellularSodiumCardiac muscleKineticsBiochemistryBiologyEndocrinologyPhysics

Abstract

fetched live from OpenAlex

Protons impart isoform-specific modulation of inactivation in neuronal, skeletal muscle, and cardiac voltage-gated sodium (NaV) channels. Although the structural basis of proton block in NaV channels has been well described, the amino acid residues responsible for the changes in NaV kinetics during extracellular acidosis are as yet unknown. We expressed wild-type (WT) and two pore mutant constructs (H880Q and C373F) of the human cardiac NaV channel, NaV1.5, in Xenopus oocytes. C373F and H880Q both attenuated proton block, abolished proton modulation of use-dependent inactivation, and altered pH modulation of the steady-state and kinetic parameters of slow inactivation. Additionally, C373F significantly reduced the maximum probability of use-dependent inactivation and slow inactivation, relative to WT. H880Q also significantly reduced the maximum probability of slow inactivation and shifted the voltage dependence of activation and fast inactivation to more positive potentials, relative to WT. These data suggest that Cys-373 and His-880 in NaV1.5 are proton sensors for use-dependent and slow inactivation and have implications in isoform-specific modulation of NaV channels.Background: Protons modify cardiac sodium channel function, potentially contributing to cardiac arrhythmia during and following ischemia.Results: Protons binding amino acids at the pore alter cardiac sodium channel function.Conclusion: Sodium channel pore protonation mediates proton block and destabilization of sodium channel slow inactivation.Significance: Understanding sodium channel proton modulation is necessary to understand the pathophysiology of cardiac acidosis. Protons impart isoform-specific modulation of inactivation in neuronal, skeletal muscle, and cardiac voltage-gated sodium (NaV) channels. Although the structural basis of proton block in NaV channels has been well described, the amino acid residues responsible for the changes in NaV kinetics during extracellular acidosis are as yet unknown. We expressed wild-type (WT) and two pore mutant constructs (H880Q and C373F) of the human cardiac NaV channel, NaV1.5, in Xenopus oocytes. C373F and H880Q both attenuated proton block, abolished proton modulation of use-dependent inactivation, and altered pH modulation of the steady-state and kinetic parameters of slow inactivation. Additionally, C373F significantly reduced the maximum probability of use-dependent inactivation and slow inactivation, relative to WT. H880Q also significantly reduced the maximum probability of slow inactivation and shifted the voltage dependence of activation and fast inactivation to more positive potentials, relative to WT. These data suggest that Cys-373 and His-880 in NaV1.5 are proton sensors for use-dependent and slow inactivation and have implications in isoform-specific modulation of NaV channels. Background: Protons modify cardiac sodium channel function, potentially contributing to cardiac arrhythmia during and following ischemia. Results: Protons binding amino acids at the pore alter cardiac sodium channel function. Conclusion: Sodium channel pore protonation mediates proton block and destabilization of sodium channel slow inactivation. Significance: Understanding sodium channel proton modulation is necessary to understand the pathophysiology of cardiac acidosis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.023
Threshold uncertainty score0.195

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.229
Teacher spread0.215 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations29
Published2013
Admission routes2
Has abstractyes

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